| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g10509 | 4:17,589,521-17,590,533 | + | C2H4g21488 | - | - | - | - | Detail |
| C1H4g28526 | 4:17,590,667-17,592,375 | - | C2H4g29020 | CX4g032279 | LOC_Os04g33530 | Os04g0410600 | - | Detail |
| C1H4g10207 | 4:17,611,929-17,612,785 | - | C2H4g02433 | - | - | Os04g0411100 | - | Detail |
| C1H4g13967 | 4:17,612,834-17,613,133 | + | C2H4g19013 | CX4g035834 | LOC_Os04g33560 | Os04g0411200 | - | Detail |
| C1H4g02095 | 4:17,616,514-17,617,085 | + | C2H4g14818 | CX4g035203 | - | - | - | Detail |
| C1H4g06511 | 4:17,626,583-17,628,114 | - | C2H4g06840 | CX4g034096 | LOC_Os04g33570 | Os04g0411400 | RCN4 | Detail |
| C1H4g03675 | 4:17,636,484-17,637,490 | + | C2H4g13082 | - | LOC_Os04g33580 | - | - | Detail |
| C1H4g15857 | 4:17,643,095-17,645,648 | + | - | - | - | - | - | Detail |
| C1H4g04480 | 4:17,654,285-17,659,578 | + | C2H4g18183 | CX4g034692 | LOC_Os04g33590 | Os04g0411800 | - | Detail |
| C1H4g28107 | 4:17,661,844-17,666,607 | + | C2H4g17971 | CX4g035360 | LOC_Os04g33600 | Os04g0412000 | - | Detail |
| C1H4g02994 | 4:17,674,149-17,674,772 | + | C2H4g01788 | CX4g035334 | LOC_Os04g33610 | Os04g0412100 | OsBIC1 | Detail |
| C1H4g08221 | 4:17,686,209-17,686,667 | + | C2H4g00589 | CX4g033895 | LOC_Os04g33630 | Os04g0412200 | - | Detail |
| C1H4g17898 | 4:17,688,326-17,688,592 | + | - | - | LOC_Os08g05460 | - | - | Detail |
| C1H4g31611 | 4:17,692,357-17,698,210 | + | C2H4g24079 | CX4g031818 | LOC_Os04g33640 | Os04g0412300 | - | Detail |
| C1H4g08556 | 4:17,706,346-17,707,891 | + | C2H4g24079 | CX4g035419 | LOC_Os04g33660 | Os04g0412500 | - | Detail |
| C1H4g15980 | 4:17,720,171-17,728,214 | + | C2H4g27573 | CX4g035285 | LOC_Os04g33690 | Os04g0412900 | - | Detail |
| C1H4g11558 | 4:17,728,418-17,732,847 | - | C2H4g17905 | CX4g032656 | LOC_Os04g33700 | Os04g0413000 | - | Detail |
| C1H4g19570 | 4:17,735,590-17,737,176 | + | C2H4g06805 | CX4g033899 | LOC_Os04g33720 | Os04g0413200 | OsCIN3 | Detail |
| C1H4g31098 | 4:17,737,261-17,737,989 | + | C2H4g06805 | CX4g033899 | LOC_Os04g33720 | Os04g0413200 | OsCIN3 | Detail |
| C1H4g06839 | 4:17,742,784-17,747,956 | + | C2H4g13973 | CX4g035303 | LOC_Os04g33740 | Os04g0413500 | GIF1, gif1, CIN2, OsCIN2, OsGIF1, WB1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003385 | 1:20,263,862-20,264,641 | + | - | - | LOC_Os01g41960 | - | - | Detail |
| CX1g004984 | 1:20,269,832-20,271,481 | + | C1H1g17733 | C2H1g20151 | LOC_Os01g40070 | Os01g0582600 | OsHARBI1-1 | Detail |
| CX1g004070 | 1:20,281,387-20,281,569 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g007125 | 1:20,282,431-20,288,327 | + | C1H1g12353 | C2H1g13531 | LOC_Os01g40094 | Os01g0583100 | - | Detail |
| CX1g005917 | 1:20,290,103-20,296,729 | - | C1H1g01246 | C2H1g19309 | LOC_Os01g40110 | Os01g0583200 | - | Detail |
| CX1g005537 | 1:20,303,696-20,308,843 | + | C1H1g08692 | C2H1g01103 | LOC_Os01g40150 | Os01g0583700 | - | Detail |
| CX1g007012 | 1:20,309,785-20,312,417 | - | - | - | LOC_Os01g40160 | Os01g0583300 | - | Detail |
| CX1g005854 | 1:20,321,522-20,326,799 | + | C1H1g06868 | C2H1g12153 | LOC_Os01g40170 | Os01g0583900 | - | Detail |
| CX1g003421 | 1:20,338,063-20,340,516 | + | - | - | LOC_Os01g40190 | Os01g0584100 | - | Detail |
| CX1g005795 | 1:20,344,050-20,347,950 | - | C1H1g22381 | C2H1g20455 | LOC_Os01g40200 | Os01g0584200 | - | Detail |
| CX1g002664 | 1:20,351,939-20,352,325 | + | C1H1g29279 | C2H1g06413 | LOC_Os01g40220 | - | - | Detail |
| CX1g003373 | 1:20,357,564-20,375,495 | + | C1H1g13029 | C2H1g09575 | LOC_Os01g40250 | Os01g0584800 | - | Detail |
| CX1g004043 | 1:20,379,216-20,380,160 | + | C1H1g07481 | C2H1g22147 | LOC_Os01g40260 | Os01g0584900 | OsWRKY77 | Detail |
| CX1g001892 | 1:20,387,683-20,392,188 | + | C1H1g26514 | C2H1g29926 | LOC_Os01g40280 | Os01g0585100 | - | Detail |
| CX1g007168 | 1:20,392,859-20,393,119 | + | - | - | - | - | - | Detail |
| CX1g004230 | 1:20,400,939-20,401,103 | + | - | - | - | - | - | Detail |
| CX1g005666 | 1:20,411,695-20,412,352 | - | C1H1g10571 | C2H1g12090 | LOC_Os01g40310 | Os01g0585300 | - | Detail |
| CX1g005135 | 1:20,413,091-20,413,964 | + | C1H1g30790 | C2H1g08627 | LOC_Os01g40320 | Os01g0585400 | - | Detail |
| CX1g006239 | 1:20,422,315-20,425,651 | + | C1H1g23111 | C2H1g14553 | LOC_Os01g40330 | Os01g0585600 | - | Detail |
| CX1g001991 | 1:20,430,747-20,437,681 | + | C1H1g16014 | C2H1g05937 | LOC_Os01g40340 | Os01g0585700 | - | Detail |