| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g18690 | 3:15,749,039-15,756,065 | + | C2H3g09323 | CX3g029905 | LOC_Os03g28270 | Os03g0725400 | - | Detail |
| C1H3g24441 | 3:15,774,902-15,776,551 | - | C2H3g26870 | CX3g026161 | LOC_Os03g30420 | Os03g0417700 | GL3.2 | Detail |
| C1H3g26776 | 3:15,786,300-15,788,640 | - | C2H3g05806 | CX3g030533 | LOC_Os03g30430 | Os03g0417800 | - | Detail |
| C1H3g22117 | 3:15,803,095-15,814,901 | - | C2H3g00213 | CX3g028562 | LOC_Os03g30460 | Os03g0417900 | - | Detail |
| C1H3g24326 | 3:15,850,983-15,855,681 | + | C2H3g11020 | CX3g030496 | LOC_Os03g30530 | Os03g0418700 | - | Detail |
| C1H3g09665 | 3:15,868,128-15,872,414 | + | C2H3g12370 | CX3g029078 | LOC_Os03g30550 | Os03g0418800 | - | Detail |
| C1H3g06989 | 3:15,878,930-15,882,303 | + | C2H3g18691 | CX3g028098 | LOC_Os03g30570 | Os03g0419100 | - | Detail |
| C1H3g12867 | 3:15,933,055-15,933,600 | + | C2H3g24235 | CX3g025925 | LOC_Os03g30620 | Os03g0419700 | - | Detail |
| C1H3g04444 | 3:15,940,359-15,945,581 | - | C2H3g01931 | CX3g030573 | LOC_Os03g30740 | Os03g0421000 | - | Detail |
| C1H3g30737 | 3:15,961,280-15,961,595 | - | - | - | - | - | - | Detail |
| C1H3g15668 | 3:15,969,138-15,970,277 | - | C2H3g23509 | CX3g027425 | LOC_Os03g31560 | - | - | Detail |
| C1H3g16102 | 3:15,971,664-15,974,294 | - | C2H3g27833 | CX3g030856 | LOC_Os12g43000 | - | - | Detail |
| C1H3g12239 | 3:16,014,473-16,020,858 | - | C2H3g16480 | CX3g031361 | LOC_Os03g30790 | Os03g0421400 | - | Detail |
| C1H3g04388 | 3:16,023,173-16,023,544 | + | C2H3g11452 | CX3g026632 | LOC_Os03g30800 | Os03g0421700 | - | Detail |
| C1H3g01834 | 3:16,026,215-16,026,693 | + | C2H3g19512 | CX3g028926 | - | Os03g0829000 | - | Detail |
| C1H3g24665 | 3:16,030,747-16,032,584 | - | C2H3g13281 | CX3g030283 | LOC_Os03g30830 | Os03g0421800 | - | Detail |
| C1H3g05010 | 3:16,069,227-16,069,439 | + | - | - | - | - | - | Detail |
| C1H3g25671 | 3:16,070,922-16,073,426 | + | C2H3g30654 | CX3g029866 | LOC_Os03g30890 | Os03g0422800 | SDRLP-8 | Detail |
| C1H3g21142 | 3:16,086,162-16,092,212 | - | C2H3g09391 | CX3g027808 | LOC_Os03g30934 | Os03g0423200 | - | Detail |
| C1H3g28137 | 3:16,093,672-16,095,012 | - | C2H3g11099 | CX3g030134 | LOC_Os03g30950 | Os03g0423300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g033874 | 4:20,253,936-20,256,182 | - | C1H4g01338 | C2H4g03118 | LOC_Os04g39489 | Os04g0470700 | - | Detail |
| CX4g032387 | 4:20,271,710-20,273,440 | + | C1H4g02842 | C2H4g06381 | LOC_Os04g39520 | Os04g0471000 | - | Detail |
| CX4g034525 | 4:20,276,318-20,277,996 | - | C1H4g00776 | C2H4g03143 | LOC_Os04g39540 | Os04g0471300 | - | Detail |
| CX4g035713 | 4:20,281,196-20,281,600 | - | - | - | - | - | - | Detail |
| CX4g035565 | 4:20,285,862-20,291,541 | - | C1H4g08563 | C2H4g24543 | LOC_Os04g39560 | Os04g0471400 | - | Detail |
| CX4g035066 | 4:20,313,462-20,316,776 | - | C1H4g31685 | C2H4g24523 | LOC_Os04g39570 | Os04g0471700 | - | Detail |
| CX4g033693 | 4:20,329,245-20,330,431 | - | C1H4g16030 | C2H4g00702 | LOC_Os04g39590 | Os04g0472100 | - | Detail |
| CX4g032102 | 4:20,330,886-20,331,668 | - | C1H4g16030 | C2H4g03647 | LOC_Os04g39600 | Os04g0472200 | - | Detail |
| CX4g032882 | 4:20,336,531-20,336,692 | - | - | - | - | - | - | Detail |
| CX4g032977 | 4:20,338,716-20,339,303 | - | - | - | - | - | - | Detail |
| CX4g034292 | 4:20,339,577-20,342,788 | + | C1H4g00073 | C2H4g19420 | LOC_Os04g39610 | Os04g0472300 | - | Detail |
| CX4g034452 | 4:20,345,076-20,345,402 | - | - | - | - | - | - | Detail |
| CX4g035839 | 4:20,348,231-20,362,516 | + | C1H4g18621 | C2H4g05936 | LOC_Os04g39650 | Os04g0472500 | - | Detail |
| CX4g036049 | 4:20,363,101-20,364,690 | - | C1H4g12075 | C2H4g04802 | LOC_Os04g39660 | - | - | Detail |
| CX4g035542 | 4:20,365,146-20,367,304 | + | C1H4g21886 | C2H4g02841 | LOC_Os04g39670 | Os04g0472700 | - | Detail |
| CX4g033721 | 4:20,370,186-20,372,507 | + | - | C2H4g28146 | LOC_Os04g39680 | Os04g0472900 | - | Detail |
| CX4g031996 | 4:20,373,190-20,375,092 | - | C1H4g18594 | C2H4g20727 | LOC_Os04g39700 | Os04g0473400 | RPL6 | Detail |
| CX4g036319 | 4:20,376,708-20,377,209 | - | C1H4g22390 | C2H4g02603 | LOC_Os04g39770 | Os04g0473800 | FCP1, FCP1/OsCLE402, Os CLE402, OsCLE402 | Detail |
| CX4g034400 | 4:20,383,090-20,393,008 | - | C1H4g00302 | C2H4g23069 | LOC_Os04g39780 | Os04g0473900 | DWA1 | Detail |
| CX4g034463 | 4:20,393,291-20,393,500 | + | - | - | - | - | - | Detail |