| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g08216 | 9:9,439,248-9,439,987 | - | C2H9g30412 | CX9g057843 | LOC_Os09g18360 | Os09g0353200 | - | Detail |
| C1H9g09295 | 9:9,440,836-9,441,919 | - | C2H9g30412 | CX9g057843 | LOC_Os09g18360 | Os09g0353200 | - | Detail |
| C1H9g04955 | 9:9,454,547-9,456,631 | + | C2H9g08214 | CX9g055425 | LOC_Os09g18390 | Os09g0353400 | - | Detail |
| C1H9g29305 | 9:9,467,542-9,467,763 | + | C2H9g27520 | CX9g055425 | LOC_Os09g18520 | Os09g0354300 | - | Detail |
| C1H9g07758 | 9:9,475,327-9,476,052 | + | C2H9g11760 | CX9g055968 | LOC_Os09g18450 | Os09g0353700 | - | Detail |
| C1H9g19178 | 9:9,479,448-9,481,196 | + | C2H9g08714 | CX9g055968 | LOC_Os09g18450 | Os09g0354100 | - | Detail |
| C1H9g30762 | 9:9,486,955-9,488,698 | - | C2H9g08214 | CX9g055425 | LOC_Os09g18520 | Os09g0354300 | - | Detail |
| C1H9g24256 | 9:9,498,867-9,501,779 | - | C2H9g09770 | CX9g056896 | LOC_Os09g18530 | Os09g0355400 | - | Detail |
| C1H9g24532 | 9:9,502,391-9,502,837 | - | C2H9g15417 | CX9g055165 | LOC_Os09g18540 | Os09g0349600 | - | Detail |
| C1H9g06855 | 9:9,508,255-9,509,735 | - | C2H9g16060 | CX9g055165 | LOC_Os09g18620 | Os09g0356200 | - | Detail |
| C1H9g22899 | 9:9,551,698-9,554,089 | + | C2H9g15103 | CX9g057944 | LOC_Os09g19400 | Os09g0358700 | OsCBM1, OsMRLP15 | Detail |
| C1H9g12366 | 9:9,556,269-9,558,506 | + | C2H9g27713 | CX9g057944 | LOC_Os09g19350 | Os09g0358000 | - | Detail |
| C1H9g27368 | 9:9,564,634-9,574,634 | + | C2H9g01105 | CX3g029985 | - | - | - | Detail |
| C1H9g19813 | 9:9,574,717-9,576,498 | + | C2H9g01105 | - | - | - | - | Detail |
| C1H9g15807 | 9:9,606,819-9,610,207 | + | C2H9g12232 | CX9g055760 | LOC_Os09g18594 | Os09g0356200 | - | Detail |
| C1H9g10170 | 9:9,636,050-9,644,685 | + | C2H9g04161 | CX9g057284 | LOC_Os09g18594 | Os09g0356200 | - | Detail |
| C1H9g09829 | 9:9,636,581-9,645,430 | - | - | - | - | - | - | Detail |
| C1H9g21628 | 9:9,654,581-9,660,202 | + | C2H9g24070 | CX9g057284 | LOC_Os09g18594 | Os09g0355400 | - | Detail |
| C1H9g09637 | 9:9,672,320-9,675,940 | - | C2H9g00341 | CX9g057245 | LOC_Os09g19280 | Os09g0357400 | - | Detail |
| C1H9g20757 | 9:9,694,729-9,696,882 | - | C2H9g00341 | CX9g057245 | LOC_Os09g19330 | Os09g0357400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g033874 | 4:20,253,936-20,256,182 | - | C1H4g01338 | C2H4g03118 | LOC_Os04g39489 | Os04g0470700 | - | Detail |
| CX4g032387 | 4:20,271,710-20,273,440 | + | C1H4g02842 | C2H4g06381 | LOC_Os04g39520 | Os04g0471000 | - | Detail |
| CX4g034525 | 4:20,276,318-20,277,996 | - | C1H4g00776 | C2H4g03143 | LOC_Os04g39540 | Os04g0471300 | - | Detail |
| CX4g035713 | 4:20,281,196-20,281,600 | - | - | - | - | - | - | Detail |
| CX4g035565 | 4:20,285,862-20,291,541 | - | C1H4g08563 | C2H4g24543 | LOC_Os04g39560 | Os04g0471400 | - | Detail |
| CX4g035066 | 4:20,313,462-20,316,776 | - | C1H4g31685 | C2H4g24523 | LOC_Os04g39570 | Os04g0471700 | - | Detail |
| CX4g033693 | 4:20,329,245-20,330,431 | - | C1H4g16030 | C2H4g00702 | LOC_Os04g39590 | Os04g0472100 | - | Detail |
| CX4g032102 | 4:20,330,886-20,331,668 | - | C1H4g16030 | C2H4g03647 | LOC_Os04g39600 | Os04g0472200 | - | Detail |
| CX4g032882 | 4:20,336,531-20,336,692 | - | - | - | - | - | - | Detail |
| CX4g032977 | 4:20,338,716-20,339,303 | - | - | - | - | - | - | Detail |
| CX4g034292 | 4:20,339,577-20,342,788 | + | C1H4g00073 | C2H4g19420 | LOC_Os04g39610 | Os04g0472300 | - | Detail |
| CX4g034452 | 4:20,345,076-20,345,402 | - | - | - | - | - | - | Detail |
| CX4g035839 | 4:20,348,231-20,362,516 | + | C1H4g18621 | C2H4g05936 | LOC_Os04g39650 | Os04g0472500 | - | Detail |
| CX4g036049 | 4:20,363,101-20,364,690 | - | C1H4g12075 | C2H4g04802 | LOC_Os04g39660 | - | - | Detail |
| CX4g035542 | 4:20,365,146-20,367,304 | + | C1H4g21886 | C2H4g02841 | LOC_Os04g39670 | Os04g0472700 | - | Detail |
| CX4g033721 | 4:20,370,186-20,372,507 | + | - | C2H4g28146 | LOC_Os04g39680 | Os04g0472900 | - | Detail |
| CX4g031996 | 4:20,373,190-20,375,092 | - | C1H4g18594 | C2H4g20727 | LOC_Os04g39700 | Os04g0473400 | RPL6 | Detail |
| CX4g036319 | 4:20,376,708-20,377,209 | - | C1H4g22390 | C2H4g02603 | LOC_Os04g39770 | Os04g0473800 | FCP1, FCP1/OsCLE402, Os CLE402, OsCLE402 | Detail |
| CX4g034400 | 4:20,383,090-20,393,008 | - | C1H4g00302 | C2H4g23069 | LOC_Os04g39780 | Os04g0473900 | DWA1 | Detail |
| CX4g034463 | 4:20,393,291-20,393,500 | + | - | - | - | - | - | Detail |