| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20716 | 3:26,449,419-26,455,721 | - | C2H3g29194 | CX3g026534 | LOC_Os03g49630 | Os03g0703300 | - | Detail |
| C1H3g05428 | 3:26,458,112-26,464,358 | - | C2H3g01101 | CX3g027729 | LOC_Os03g49640 | Os03g0703400 | OsCSL1, MKKK22 | Detail |
| C1H3g02932 | 3:26,471,210-26,471,830 | + | C2H3g22172 | CX3g031175 | - | Os03g0703600 | - | Detail |
| C1H3g27763 | 3:26,479,354-26,481,983 | + | C2H3g29973 | CX3g028108 | LOC_Os03g49700 | Os03g0703900 | - | Detail |
| C1H3g27362 | 3:26,483,366-26,484,792 | + | C2H3g13190 | CX3g026571 | LOC_Os03g49710 | Os03g0704000 | - | Detail |
| C1H3g23851 | 3:26,486,613-26,489,527 | + | C2H3g08604 | CX3g029652 | LOC_Os03g49720 | Os03g0704100 | - | Detail |
| C1H3g07852 | 3:26,490,214-26,493,452 | - | C2H3g29014 | CX3g027461 | LOC_Os03g49730 | Os03g0704200 | - | Detail |
| C1H3g06974 | 3:26,493,521-26,493,748 | - | C2H3g23956 | - | LOC_Os03g49730 | Os03g0704200 | - | Detail |
| C1H3g28557 | 3:26,494,249-26,499,170 | + | C2H3g16102 | CX3g029894 | LOC_Os03g49750 | Os03g0704400 | - | Detail |
| C1H3g03526 | 3:26,509,027-26,518,121 | + | C2H3g11078 | CX3g026920 | LOC_Os03g49770 | Os03g0704700 | ORP1C | Detail |
| C1H3g14731 | 3:26,531,849-26,536,412 | - | C2H3g28946 | CX3g030070 | LOC_Os03g49800 | Os03g0705300 | - | Detail |
| C1H3g17034 | 3:26,584,653-26,586,775 | + | C2H3g19805 | CX3g026164 | LOC_Os03g49830 | Os03g0705800 | - | Detail |
| C1H3g02900 | 3:26,641,456-26,648,704 | - | C2H3g09610 | CX3g028672 | LOC_Os03g49900 | Os03g0706900 | LE, TT3.1, DGS1 | Detail |
| C1H3g20914 | 3:26,657,222-26,659,547 | + | C2H3g07887 | CX3g028303 | LOC_Os03g49940 | Os03g0707200 | TT3.2 | Detail |
| C1H3g18351 | 3:26,661,178-26,669,551 | - | C2H3g17433 | CX3g029801 | LOC_Os03g49960 | Os03g0707300 | - | Detail |
| C1H3g18483 | 3:26,708,749-26,717,022 | - | C2H3g19955 | CX3g027756 | LOC_Os03g50010 | Os03g0707900 | - | Detail |
| C1H3g03460 | 3:26,721,806-26,723,504 | + | C2H3g30153 | CX3g025431 | LOC_Os03g50030 | Os03g0708000 | - | Detail |
| C1H3g17884 | 3:26,725,970-26,728,869 | - | C2H3g07785 | CX3g025623 | LOC_Os03g50040 | Os03g0708100 | - | Detail |
| C1H3g20236 | 3:26,735,509-26,739,257 | + | C2H3g01941 | CX3g030384 | LOC_Os03g50070 | Os03g0708400 | - | Detail |
| C1H3g01824 | 3:26,739,932-26,740,886 | - | C2H3g11988 | - | LOC_Os03g50080 | Os03g0708500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005284 | 1:19,840,354-19,841,424 | + | C1H1g31047 | C2H1g30674 | LOC_Os01g39350 | Os01g0575400 | - | Detail |
| CX1g002175 | 1:19,845,998-19,863,003 | - | C1H1g31451 | C2H1g09392 | LOC_Os01g39380 | Os01g0575500 | OsSCD1 | Detail |
| CX1g005111 | 1:19,870,249-19,873,857 | - | C1H6g07558 | C2H2g00568 | LOC_Os01g46100 | - | - | Detail |
| CX1g004032 | 1:19,900,276-19,900,650 | + | - | - | - | - | - | Detail |
| CX1g002537 | 1:19,901,526-19,901,879 | + | - | - | - | - | - | Detail |
| CX1g007101 | 1:19,907,093-19,907,577 | - | - | C2H8g28836 | - | - | - | Detail |
| CX1g001079 | 1:19,919,363-19,919,898 | + | C1H1g22058 | C2H1g23511 | LOC_Os01g39480 | Os01g0576100 | Rb1 | Detail |
| CX1g002168 | 1:19,984,781-19,984,957 | + | - | - | - | - | - | Detail |
| CX1g004267 | 1:19,996,399-20,003,092 | + | C1H1g30169 | C2H1g23392 | LOC_Os01g39580 | Os01g0575701 | - | Detail |
| CX1g005578 | 1:20,016,527-20,019,840 | - | C1H1g25385 | C2H1g00498 | LOC_Os01g39600 | Os01g0577600 | - | Detail |
| CX1g000218 | 1:20,022,966-20,023,589 | - | - | - | - | - | - | Detail |
| CX1g004896 | 1:20,029,435-20,029,587 | + | - | - | - | - | - | Detail |
| CX1g005347 | 1:20,033,599-20,038,732 | - | C1H1g03498 | C2H1g04424 | LOC_Os01g39630 | Os01g0578000 | RAD51C, RAD51C-3 | Detail |
| CX1g003861 | 1:20,045,937-20,049,831 | - | C1H1g20612 | C2H1g11258 | LOC_Os01g39650 | Os01g0578200 | - | Detail |
| CX1g000177 | 1:20,059,911-20,060,959 | + | C1H1g26503 | C2H1g04472 | LOC_Os01g39670 | Os01g0578500 | SAF, SaF, OsFbox019, OsFbox19, Os_F0070 | Detail |
| CX1g001044 | 1:20,068,971-20,070,290 | + | - | - | LOC_Os01g39690 | Os01g0578800 | - | Detail |
| CX1g006142 | 1:20,072,391-20,072,678 | + | - | - | - | Os11g0596250 | - | Detail |
| CX1g002194 | 1:20,076,154-20,076,348 | + | - | - | - | - | - | Detail |
| CX1g001536 | 1:20,077,678-20,077,890 | - | - | - | - | - | - | Detail |
| CX1g006804 | 1:20,087,481-20,087,768 | - | - | - | LOC_Os01g39710 | Os01g0579000 | - | Detail |