| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g03020 | 12:18,711,178-18,715,933 | - | C2H12g21743 | CX12g017177 | LOC_Os12g37740 | Os12g0564800 | Pijx | Detail |
| C1H12g20951 | 12:18,717,603-18,717,788 | - | C2H12g03104 | - | - | - | - | Detail |
| C1H12g08134 | 12:18,718,041-18,719,051 | + | C2H12g05639 | CX12g017162 | LOC_Os12g37750 | Os12g0565000 | - | Detail |
| C1H12g19073 | 12:18,719,086-18,721,085 | + | C2H12g05838 | CX12g017162 | LOC_Os12g37750 | Os12g0589400 | HSA1a, HSA1a-j | Detail |
| C1H12g28772 | 12:18,727,899-18,733,647 | + | C2H12g00801 | CX12g017607 | LOC_Os12g37770 | Os12g0565200 | - | Detail |
| C1H12g23639 | 12:18,739,654-18,740,493 | + | C2H12g00801 | CX12g017607 | LOC_Os12g37770 | Os12g0565200 | - | Detail |
| C1H12g05537 | 12:18,740,899-18,745,201 | - | C2H12g17933 | CX12g016058 | LOC_Os12g37780 | Os12g0565300 | - | Detail |
| C1H12g28343 | 12:18,758,940-18,762,350 | + | C2H12g19909 | CX12g018715 | LOC_Os12g37830 | - | - | Detail |
| C1H12g19479 | 12:18,778,009-18,782,691 | + | C2H12g20757 | CX12g016748 | LOC_Os12g37840 | Os12g0566000 | - | Detail |
| C1H12g30349 | 12:18,785,492-18,787,554 | - | C2H12g10606 | CX12g015842 | LOC_Os12g37850 | Os12g0566100 | - | Detail |
| C1H12g24725 | 12:18,791,406-18,799,854 | + | C2H12g09792 | CX12g016396 | LOC_Os12g37860 | Os12g0566200 | OsMOS1 | Detail |
| C1H12g27221 | 12:18,801,904-18,805,814 | + | C2H12g16443 | CX12g018274 | LOC_Os12g37870 | Os12g0566300 | OsACL-A2, SPL30 | Detail |
| C1H12g06981 | 12:18,807,785-18,810,110 | + | C2H12g07524 | CX12g015726 | LOC_Os12g37880 | Os12g0566400 | - | Detail |
| C1H12g19310 | 12:18,811,531-18,820,372 | + | C2H12g28239 | CX12g016486 | LOC_Os12g37890 | Os12g0566500 | - | Detail |
| C1H12g31629 | 12:18,821,335-18,821,733 | + | C2H12g15187 | CX12g016139 | LOC_Os12g37900 | Os12g0566600 | - | Detail |
| C1H12g27584 | 12:18,822,585-18,827,014 | - | C2H12g00556 | CX12g018002 | LOC_Os12g37910 | Os12g0566700 | - | Detail |
| C1H12g23420 | 12:18,830,381-18,833,920 | - | C2H12g19027 | CX12g017283 | LOC_Os12g37939 | Os12g0566800 | - | Detail |
| C1H12g27861 | 12:18,834,976-18,844,346 | - | C2H12g24170 | CX12g017681 | LOC_Os12g37939 | Os12g0566900 | - | Detail |
| C1H12g25945 | 12:18,846,714-18,851,977 | + | C2H12g14640 | CX12g015677 | LOC_Os12g37960 | - | - | Detail |
| C1H12g02492 | 12:18,854,362-18,855,307 | - | C2H12g13529 | CX12g017026 | LOC_Os12g37970 | Os12g0567300 | Os2R_MYB98 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005284 | 1:19,840,354-19,841,424 | + | C1H1g31047 | C2H1g30674 | LOC_Os01g39350 | Os01g0575400 | - | Detail |
| CX1g002175 | 1:19,845,998-19,863,003 | - | C1H1g31451 | C2H1g09392 | LOC_Os01g39380 | Os01g0575500 | OsSCD1 | Detail |
| CX1g005111 | 1:19,870,249-19,873,857 | - | C1H6g07558 | C2H2g00568 | LOC_Os01g46100 | - | - | Detail |
| CX1g004032 | 1:19,900,276-19,900,650 | + | - | - | - | - | - | Detail |
| CX1g002537 | 1:19,901,526-19,901,879 | + | - | - | - | - | - | Detail |
| CX1g007101 | 1:19,907,093-19,907,577 | - | - | C2H8g28836 | - | - | - | Detail |
| CX1g001079 | 1:19,919,363-19,919,898 | + | C1H1g22058 | C2H1g23511 | LOC_Os01g39480 | Os01g0576100 | Rb1 | Detail |
| CX1g002168 | 1:19,984,781-19,984,957 | + | - | - | - | - | - | Detail |
| CX1g004267 | 1:19,996,399-20,003,092 | + | C1H1g30169 | C2H1g23392 | LOC_Os01g39580 | Os01g0575701 | - | Detail |
| CX1g005578 | 1:20,016,527-20,019,840 | - | C1H1g25385 | C2H1g00498 | LOC_Os01g39600 | Os01g0577600 | - | Detail |
| CX1g000218 | 1:20,022,966-20,023,589 | - | - | - | - | - | - | Detail |
| CX1g004896 | 1:20,029,435-20,029,587 | + | - | - | - | - | - | Detail |
| CX1g005347 | 1:20,033,599-20,038,732 | - | C1H1g03498 | C2H1g04424 | LOC_Os01g39630 | Os01g0578000 | RAD51C, RAD51C-3 | Detail |
| CX1g003861 | 1:20,045,937-20,049,831 | - | C1H1g20612 | C2H1g11258 | LOC_Os01g39650 | Os01g0578200 | - | Detail |
| CX1g000177 | 1:20,059,911-20,060,959 | + | C1H1g26503 | C2H1g04472 | LOC_Os01g39670 | Os01g0578500 | SAF, SaF, OsFbox019, OsFbox19, Os_F0070 | Detail |
| CX1g001044 | 1:20,068,971-20,070,290 | + | - | - | LOC_Os01g39690 | Os01g0578800 | - | Detail |
| CX1g006142 | 1:20,072,391-20,072,678 | + | - | - | - | Os11g0596250 | - | Detail |
| CX1g002194 | 1:20,076,154-20,076,348 | + | - | - | - | - | - | Detail |
| CX1g001536 | 1:20,077,678-20,077,890 | - | - | - | - | - | - | Detail |
| CX1g006804 | 1:20,087,481-20,087,768 | - | - | - | LOC_Os01g39710 | Os01g0579000 | - | Detail |