| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g12162 | 9:15,277,375-15,281,226 | - | C2H9g27046 | CX9g057628 | LOC_Os09g30412 | Os09g0482600 | - | Detail |
| C1H9g30961 | 9:15,287,379-15,290,075 | + | C2H9g23476 | CX9g058160 | LOC_Os09g30414 | Os09g0482200 | - | Detail |
| C1H9g13750 | 9:15,290,307-15,290,974 | - | C2H9g03595 | - | LOC_Os09g30418 | Os09g0482300 | OsLEA6 | Detail |
| C1H9g11589 | 9:15,291,489-15,295,185 | - | C2H9g12791 | CX9g054954 | LOC_Os09g30418 | Os09g0482600 | - | Detail |
| C1H9g24340 | 9:15,296,099-15,296,413 | + | - | CX9g054891 | LOC_Os09g30442 | - | - | Detail |
| C1H9g10634 | 9:15,298,551-15,302,958 | - | C2H9g26838 | CX9g055785 | LOC_Os09g30446 | Os09g0286400 | OsNHX5, GPA6 | Detail |
| C1H9g19752 | 9:15,304,113-15,309,395 | - | C2H9g10380 | CX9g057954 | LOC_Os09g30458 | Os09g0482660 | - | Detail |
| C1H9g05257 | 9:15,310,601-15,311,110 | + | - | CX9g057996 | LOC_Os09g30462 | Os09g0482700 | - | Detail |
| C1H9g15788 | 9:15,311,709-15,314,826 | - | C2H9g04333 | CX9g057490 | LOC_Os09g30466 | Os09g0482680 | OsaTRZ2 | Detail |
| C1H9g12404 | 9:15,315,496-15,321,032 | - | C2H9g30076 | CX9g057638 | LOC_Os09g30474 | Os09g0482720 | - | Detail |
| C1H9g00782 | 9:15,322,810-15,327,159 | + | C2H9g14515 | CX9g055038 | LOC_Os09g30478 | Os09g0482740 | - | Detail |
| C1H9g00122 | 9:15,341,984-15,342,787 | - | C2H9g27195 | CX9g056851 | LOC_Os09g30486 | Os09g0482780 | - | Detail |
| C1H9g03000 | 9:15,348,365-15,348,778 | + | C2H9g17845 | CX9g057607 | LOC_Os09g30490 | Os09g0482800 | OsSUR1 | Detail |
| C1H9g13405 | 9:15,349,070-15,350,530 | - | C2H9g19073 | CX9g055841 | LOC_Os09g30980 | Os09g0482900 | - | Detail |
| C1H9g30699 | 9:15,355,896-15,356,309 | + | C2H9g17845 | CX9g057607 | LOC_Os09g30506 | Os09g0482840 | - | Detail |
| C1H9g23005 | 9:15,356,706-15,360,233 | - | C2H9g18629 | CX9g057859 | LOC_Os09g30510 | Os09g0482860 | - | Detail |
| C1H9g25042 | 9:15,368,042-15,368,458 | + | C2H9g17845 | CX9g057607 | LOC_Os09g31000 | Os09g0483100 | - | Detail |
| C1H9g13668 | 9:15,372,689-15,373,111 | + | C2H9g17845 | CX9g057607 | LOC_Os09g31025 | Os09g0483300 | - | Detail |
| C1H9g13971 | 9:15,376,532-15,376,945 | + | C2H9g17845 | CX9g057607 | LOC_Os09g31040 | Os09g0483500 | - | Detail |
| C1H9g12952 | 9:15,377,954-15,379,033 | - | C2H9g03838 | CX9g057792 | LOC_Os09g31050 | Os09g0483600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005284 | 1:19,840,354-19,841,424 | + | C1H1g31047 | C2H1g30674 | LOC_Os01g39350 | Os01g0575400 | - | Detail |
| CX1g002175 | 1:19,845,998-19,863,003 | - | C1H1g31451 | C2H1g09392 | LOC_Os01g39380 | Os01g0575500 | OsSCD1 | Detail |
| CX1g005111 | 1:19,870,249-19,873,857 | - | C1H6g07558 | C2H2g00568 | LOC_Os01g46100 | - | - | Detail |
| CX1g004032 | 1:19,900,276-19,900,650 | + | - | - | - | - | - | Detail |
| CX1g002537 | 1:19,901,526-19,901,879 | + | - | - | - | - | - | Detail |
| CX1g007101 | 1:19,907,093-19,907,577 | - | - | C2H8g28836 | - | - | - | Detail |
| CX1g001079 | 1:19,919,363-19,919,898 | + | C1H1g22058 | C2H1g23511 | LOC_Os01g39480 | Os01g0576100 | Rb1 | Detail |
| CX1g002168 | 1:19,984,781-19,984,957 | + | - | - | - | - | - | Detail |
| CX1g004267 | 1:19,996,399-20,003,092 | + | C1H1g30169 | C2H1g23392 | LOC_Os01g39580 | Os01g0575701 | - | Detail |
| CX1g005578 | 1:20,016,527-20,019,840 | - | C1H1g25385 | C2H1g00498 | LOC_Os01g39600 | Os01g0577600 | - | Detail |
| CX1g000218 | 1:20,022,966-20,023,589 | - | - | - | - | - | - | Detail |
| CX1g004896 | 1:20,029,435-20,029,587 | + | - | - | - | - | - | Detail |
| CX1g005347 | 1:20,033,599-20,038,732 | - | C1H1g03498 | C2H1g04424 | LOC_Os01g39630 | Os01g0578000 | RAD51C, RAD51C-3 | Detail |
| CX1g003861 | 1:20,045,937-20,049,831 | - | C1H1g20612 | C2H1g11258 | LOC_Os01g39650 | Os01g0578200 | - | Detail |
| CX1g000177 | 1:20,059,911-20,060,959 | + | C1H1g26503 | C2H1g04472 | LOC_Os01g39670 | Os01g0578500 | SAF, SaF, OsFbox019, OsFbox19, Os_F0070 | Detail |
| CX1g001044 | 1:20,068,971-20,070,290 | + | - | - | LOC_Os01g39690 | Os01g0578800 | - | Detail |
| CX1g006142 | 1:20,072,391-20,072,678 | + | - | - | - | Os11g0596250 | - | Detail |
| CX1g002194 | 1:20,076,154-20,076,348 | + | - | - | - | - | - | Detail |
| CX1g001536 | 1:20,077,678-20,077,890 | - | - | - | - | - | - | Detail |
| CX1g006804 | 1:20,087,481-20,087,768 | - | - | - | LOC_Os01g39710 | Os01g0579000 | - | Detail |