| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g036598 | 4:17,824,738-17,825,574 | - | C1H4g00658 | C2H4g17951 | LOC_Os04g34600 | Os04g0423400 | - | Detail |
| CX4g035077 | 4:17,830,999-17,831,844 | - | - | - | - | - | - | Detail |
| CX4g033739 | 4:17,840,877-17,843,705 | - | C1H4g15226 | C2H4g00874 | LOC_Os04g34620 | Os04g0423700 | - | Detail |
| CX4g033294 | 4:17,844,871-17,845,989 | + | - | - | - | - | - | Detail |
| CX4g034218 | 4:17,853,231-17,859,348 | + | C1H4g04108 | C2H4g03351 | LOC_Os04g34670 | Os04g0424200 | OsDNA2_17 | Detail |
| CX4g036298 | 4:17,870,213-17,878,649 | + | C1H4g29348 | C2H4g04488 | LOC_Os04g34720 | Os04g0425100 | - | Detail |
| CX4g035124 | 4:17,873,156-17,873,455 | - | - | - | - | Os04g0425800 | - | Detail |
| CX4g033467 | 4:17,879,805-17,880,248 | - | - | - | - | - | - | Detail |
| CX4g031469 | 4:17,922,906-17,925,254 | - | C1H4g00150 | C2H4g12158 | LOC_Os02g32170 | Os04g0542100 | - | Detail |
| CX4g034982 | 4:17,944,401-17,944,601 | - | - | - | - | - | - | Detail |
| CX4g034267 | 4:18,004,894-18,005,484 | - | - | - | - | - | - | Detail |
| CX4g033205 | 4:18,026,380-18,029,600 | - | C1H4g11803 | C2H4g00219 | LOC_Os04g34930 | Os04g0428900 | - | Detail |
| CX4g034835 | 4:18,039,939-18,042,414 | - | C1H4g21640 | C2H4g26513 | LOC_Os04g34940 | Os04g0428950 | - | Detail |
| CX4g033075 | 4:18,049,649-18,050,416 | - | C1H4g19022 | C2H4g12069 | LOC_Os04g34970 | Os04g0429050 | - | Detail |
| CX4g034358 | 4:18,052,482-18,053,063 | - | - | - | - | Os04g0411651 | - | Detail |
| CX4g034286 | 4:18,059,691-18,063,923 | + | C1H4g13260 | C2H4g26187 | LOC_Os04g34976 | Os04g0429100 | OsSET19, SDG708 | Detail |
| CX4g032065 | 4:18,066,498-18,069,691 | + | C1H4g08749 | C2H4g07693 | LOC_Os04g34984 | Os04g0429200 | - | Detail |
| CX4g035546 | 4:18,073,383-18,075,559 | + | C1H4g29079 | C2H4g22507 | LOC_Os04g35000 | Os04g0429300 | - | Detail |
| CX4g034846 | 4:18,078,393-18,081,044 | + | C1H4g16663 | C2H4g06383 | LOC_Os04g35010 | Os04g0429400 | - | Detail |
| CX4g036089 | 4:18,081,405-18,085,194 | - | C1H4g22025 | C2H4g12633 | LOC_Os04g35020 | Os04g0429500 | OsCSLH2 | Detail |