| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g22731 | 1:24,806,899-24,821,417 | - | C2H1g03816 | CX1g004904 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| C1H1g06484 | 1:24,822,645-24,824,648 | + | C2H1g17432 | CX1g001832 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| C1H1g21202 | 1:24,825,534-24,828,516 | - | C2H1g29587 | CX1g005378 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| C1H1g29809 | 1:24,831,421-24,834,882 | + | C2H1g22453 | CX1g000800 | - | - | - | Detail |
| C1H1g09148 | 1:24,836,776-24,837,408 | - | C2H1g18621 | CX1g006182 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| C1H1g01369 | 1:24,845,874-24,854,466 | + | C2H1g02873 | CX1g006519 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| C1H1g15834 | 1:24,862,555-24,939,365 | - | C2H1g22016 | CX1g002522 | LOC_Os01g48830 | Os01g0680700 | - | Detail |
| C1H1g09308 | 1:24,863,371-24,867,936 | + | C2H1g10975 | CX1g004313 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| C1H1g00895 | 1:24,869,571-24,872,932 | + | C2H1g25010 | CX1g003619 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| C1H1g15404 | 1:24,886,940-24,893,719 | + | C2H1g01242 | CX1g003718 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| C1H1g14743 | 1:24,904,493-24,905,653 | + | C2H1g18628 | CX1g004327 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| C1H1g08166 | 1:24,917,950-24,920,122 | + | C2H1g09841 | CX1g006918 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| C1H1g07424 | 1:24,925,640-24,926,551 | + | C2H1g14175 | CX1g002655 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| C1H1g07492 | 1:24,931,644-24,932,133 | + | - | - | - | Os01g0680650 | - | Detail |
| C1H1g17992 | 1:24,948,315-24,950,911 | - | C2H1g29263 | CX1g007143 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| C1H1g20689 | 1:24,952,547-24,958,250 | - | C2H1g05013 | CX1g002388 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| C1H1g14533 | 1:24,963,599-24,966,274 | + | C2H1g17133 | CX1g001461 | LOC_Os01g48900 | Os01g0681100 | - | Detail |
| C1H1g07251 | 1:24,966,702-24,969,016 | + | C2H1g07127 | CX1g001461 | LOC_Os01g48900 | Os05g0556100 | - | Detail |
| C1H1g21340 | 1:24,970,459-24,975,608 | - | C2H1g13127 | CX1g007055 | LOC_Os01g48910 | Os01g0681200 | - | Detail |
| C1H1g18369 | 1:24,978,777-24,984,105 | - | C2H1g29187 | CX1g000478 | LOC_Os01g48920 | Os01g0681400 | ATG6A, OsATG6a | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g036075 | 4:16,617,595-16,622,238 | + | C1H4g13821 | C2H4g26614 | LOC_Os04g32650 | Os04g0398300 | OsGlyRS1 | Detail |
| CX4g032937 | 4:16,625,901-16,628,307 | + | C1H4g05012 | C2H4g16415 | LOC_Os04g32660 | Os04g0398500 | - | Detail |
| CX4g033047 | 4:16,631,009-16,633,330 | + | C1H4g28546 | C2H4g00377 | LOC_Os04g32670 | Os04g0398600 | - | Detail |
| CX4g032973 | 4:16,633,810-16,634,499 | - | C1H4g21316 | C2H4g14149 | LOC_Os04g32680 | Os04g0398700 | - | Detail |
| CX4g032900 | 4:16,637,075-16,650,820 | - | C1H4g20511 | C2H4g19288 | LOC_Os04g32690 | Os04g0398800 | - | Detail |
| CX4g032385 | 4:16,652,578-16,652,922 | - | - | - | LOC_Os04g32700 | Os04g0398900 | - | Detail |
| CX4g032898 | 4:16,654,252-16,657,450 | + | C1H4g07845 | C2H4g10637 | LOC_Os04g32710 | Os04g0399000 | - | Detail |
| CX4g035881 | 4:16,664,631-16,667,858 | + | C1H4g26028 | C2H4g00186 | LOC_Os04g32740 | Os04g0399300 | - | Detail |
| CX4g033370 | 4:16,671,601-16,673,661 | + | - | C2H4g06170 | LOC_Os04g32770 | Os04g0399600 | - | Detail |
| CX4g033264 | 4:16,691,555-16,692,427 | + | C1H4g01528 | C2H4g28477 | LOC_Os04g32790 | Os04g0399800 | - | Detail |
| CX4g036672 | 4:16,761,312-16,762,750 | + | C1H4g14312 | C2H4g07932 | LOC_Os04g32870 | Os04g0401200 | - | Detail |
| CX4g036045 | 4:16,763,656-16,771,188 | - | C1H4g19844 | C2H4g06643 | LOC_Os04g32880 | Os04g0401300 | - | Detail |
| CX4g033343 | 4:16,775,775-16,776,146 | + | C1H6g18993 | C2H4g15513 | - | - | - | Detail |
| CX4g031483 | 4:16,780,918-16,781,532 | - | - | - | - | - | - | Detail |
| CX4g035031 | 4:16,795,994-16,799,805 | + | C1H4g01351 | C2H4g23329 | LOC_Os04g32920 | Os04g0401700 | - | Detail |
| CX4g032032 | 4:16,802,104-16,804,847 | - | C1H4g00308 | C2H4g07669 | LOC_Os04g32930 | Os04g0401800 | OsSnm1 | Detail |
| CX4g033022 | 4:16,807,458-16,813,883 | - | C1H4g06913 | C2H4g08341 | LOC_Os04g32940 | Os04g0401900 | - | Detail |
| CX4g033505 | 4:16,820,416-16,823,528 | - | C1H4g17832 | C2H4g27588 | LOC_Os04g32950 | Os04g0402100 | - | Detail |
| CX4g033647 | 4:16,828,579-16,837,051 | - | C1H4g28962 | C2H4g29861 | LOC_Os04g32960 | Os04g0402200 | - | Detail |
| CX4g036231 | 4:16,842,011-16,845,534 | + | C1H4g29248 | C2H4g17148 | LOC_Os04g32970 | Os04g0402300 | - | Detail |