| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22410 | 3:9,653,640-9,670,836 | - | C2H3g27650 | CX3g028723 | LOC_Os03g19340 | Os03g0306302 | - | Detail |
| C1H3g02755 | 3:9,673,057-9,684,839 | - | C2H3g07435 | CX3g027549 | LOC_Os03g19350 | Os03g0306400 | - | Detail |
| C1H3g18574 | 3:9,693,186-9,693,707 | + | C2H3g20582 | CX3g026074 | LOC_Os03g19370 | Os03g0239400 | - | Detail |
| C1H3g08148 | 3:9,697,027-9,697,413 | + | C2H3g07871 | CX3g027392 | LOC_Os03g19380 | Os03g0306800 | - | Detail |
| C1H3g23949 | 3:9,698,066-9,699,944 | - | C2H3g26352 | CX3g025960 | LOC_Os03g19390 | Os03g0306900 | - | Detail |
| C1H3g18672 | 3:9,700,354-9,702,247 | + | C2H3g08753 | CX3g025770 | LOC_Os03g19400 | Os03g0307000 | - | Detail |
| C1H3g26919 | 3:9,704,213-9,712,441 | + | C2H3g28158 | CX3g025641 | LOC_Os03g19410 | Os03g0307100 | - | Detail |
| C1H3g07326 | 3:9,713,219-9,714,250 | + | C2H3g27859 | CX3g028955 | LOC_Os03g19427 | Os03g0307300 | - | Detail |
| C1H3g08713 | 3:9,718,529-9,721,420 | - | C2H3g23633 | CX3g027893 | LOC_Os03g19420 | Os03g0307200 | NAS2, OsNAS2 | Detail |
| C1H3g12875 | 3:9,726,075-9,726,569 | + | C2H3g12347 | CX3g027748 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g10945 | 3:9,728,815-9,730,023 | + | C2H3g00214 | CX3g025182 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C1H3g01117 | 3:9,730,438-9,733,711 | + | C2H3g27228 | CX3g028724 | LOC_Os03g19462 | - | - | Detail |
| C1H3g07984 | 3:9,736,446-9,738,788 | + | C2H3g27622 | CX3g026010 | LOC_Os03g19470 | Os03g0307700 | - | Detail |
| C1H3g00240 | 3:9,739,183-9,746,390 | - | C2H3g03655 | CX3g031316 | LOC_Os03g19480 | Os03g0307800 | IEZ1, OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718 | Detail |
| C1H3g04726 | 3:9,747,960-9,748,489 | + | C2H3g06844 | CX3g025615 | LOC_Os03g13830 | Os03g0307900 | - | Detail |
| C1H3g19730 | 3:9,749,541-9,752,191 | + | C2H3g23976 | CX3g024948 | LOC_Os03g19500 | Os03g0308000 | SMG3 | Detail |
| C1H3g14154 | 3:9,753,787-9,756,227 | - | C2H3g08220 | CX3g029346 | LOC_Os03g19510 | Os03g0308100 | - | Detail |
| C1H3g03825 | 3:9,757,509-9,765,821 | - | C2H3g05621 | CX3g025603 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| C1H3g14624 | 3:9,768,562-9,772,665 | + | C2H3g16168 | CX3g029899 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| C1H3g25260 | 3:9,776,622-9,777,400 | + | C2H3g22628 | CX3g025445 | LOC_Os03g19540 | Os03g0308600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g034738 | 4:12,901,289-12,901,642 | - | C1H6g11744 | C2H4g20285 | LOC_Os04g25160 | Os04g0317500 | - | Detail |
| CX4g033192 | 4:12,904,484-12,904,633 | + | - | - | - | - | - | Detail |
| CX4g034660 | 4:12,924,774-12,925,127 | - | C1H6g11744 | C2H4g20285 | LOC_Os04g25190 | Os04g0317800 | - | Detail |
| CX4g034352 | 4:12,941,489-12,941,734 | - | - | - | - | - | - | Detail |
| CX4g032765 | 4:12,967,771-12,968,548 | - | C1H6g08206 | - | - | - | - | Detail |
| CX4g031643 | 4:12,979,058-12,979,495 | - | - | - | - | - | - | Detail |
| CX4g034682 | 4:12,994,899-12,995,321 | - | - | - | - | - | - | Detail |
| CX4g032327 | 4:13,036,250-13,037,761 | + | C1H4g01135 | C2H4g27440 | LOC_Os04g24850 | Os04g0319700 | - | Detail |
| CX4g036582 | 4:13,047,184-13,048,698 | + | C1H4g27404 | C2H4g14364 | LOC_Os04g24850 | Os04g0319800 | - | Detail |
| CX4g034067 | 4:13,049,453-13,058,341 | - | C1H4g11765 | C2H4g16249 | LOC_Os04g25960 | Os04g0320000 | - | Detail |
| CX4g034663 | 4:13,066,575-13,071,613 | + | C1H4g08601 | C2H4g13198 | LOC_Os04g25400 | Os04g0320100 | OsHCAR | Detail |
| CX4g033316 | 4:13,072,799-13,075,998 | - | C1H4g12613 | C2H4g23070 | LOC_Os04g25410 | Os04g0320200 | - | Detail |
| CX4g032409 | 4:13,092,534-13,092,805 | + | - | - | - | - | - | Detail |
| CX4g035640 | 4:13,095,176-13,095,493 | + | - | - | - | - | - | Detail |
| CX4g032890 | 4:13,100,405-13,100,665 | - | - | - | - | - | - | Detail |
| CX4g036503 | 4:13,101,346-13,102,916 | - | C1H4g07570 | C2H4g15158 | LOC_Os04g24850 | Os04g0320700 | - | Detail |
| CX4g034511 | 4:13,113,086-13,115,194 | + | C1H4g16139 | C2H4g21449 | LOC_Os04g24850 | Os04g0320700 | - | Detail |
| CX4g035140 | 4:13,117,168-13,117,377 | + | - | - | - | Os04g0294812 | - | Detail |
| CX4g035636 | 4:13,120,992-13,121,624 | - | - | - | - | - | - | Detail |
| CX4g034960 | 4:13,125,662-13,127,575 | + | C1H4g05580 | C2H4g08941 | LOC_Os04g25540 | Os04g0321500 | mtRPL27a, S28 | Detail |