| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g05524 | 4:24,078,587-24,082,819 | + | C2H4g26256 | CX4g031950 | LOC_Os04g46780 | Os04g0554200 | - | Detail |
| C1H4g29756 | 4:24,087,450-24,087,842 | + | C2H4g08626 | CX4g033498 | LOC_Os04g46810 | Os04g0554500 | OsR3L1, OsHyPRP06/R3L1, OsHyPRP06 | Detail |
| C1H4g29446 | 4:24,090,620-24,091,015 | + | C2H4g15219 | CX4g033498 | LOC_Os04g46810 | Os04g0554500 | OsR3L1, OsHyPRP06/R3L1, OsHyPRP06 | Detail |
| C1H4g22406 | 4:24,097,740-24,098,153 | + | C2H4g06180 | CX4g034369 | LOC_Os04g46830 | Os04g0554800 | - | Detail |
| C1H4g22897 | 4:24,103,734-24,104,285 | - | C2H4g00137 | CX4g035831 | LOC_Os04g46850 | Os04g0554900 | - | Detail |
| C1H4g08480 | 4:24,110,730-24,112,865 | + | C2H4g00621 | CX4g032521 | LOC_Os04g46860 | Os04g0555000 | OsHAM3 | Detail |
| C1H4g10618 | 4:24,138,324-24,141,810 | - | C2H4g19260 | CX4g032555 | LOC_Os04g46880 | Os04g0555300 | - | Detail |
| C1H4g20955 | 4:24,146,585-24,150,356 | + | C2H4g01436 | CX4g034039 | LOC_Os07g04850 | Os04g0555400 | - | Detail |
| C1H4g31360 | 4:24,150,583-24,170,537 | - | C2H4g27783 | CX4g033508 | LOC_Os04g46892 | Os04g0555600 | - | Detail |
| C1H4g07997 | 4:24,174,388-24,175,153 | - | C2H4g05762 | CX4g034295 | LOC_Os04g46910 | Os04g0555700 | - | Detail |
| C1H4g10585 | 4:24,176,299-24,178,634 | - | C2H4g18497 | CX4g034881 | LOC_Os04g46920 | Os04g0555800 | - | Detail |
| C1H4g11489 | 4:24,180,777-24,183,500 | - | C2H4g06289 | CX4g034263 | LOC_Os04g46930 | Os04g0555900 | - | Detail |
| C1H4g03272 | 4:24,186,561-24,192,372 | + | C2H4g08766 | CX4g036356 | LOC_Os04g46940 | Os04g0556000 | - | Detail |
| C1H4g30189 | 4:24,196,026-24,198,029 | + | C2H4g05648 | CX4g034227 | LOC_Os04g46960 | Os04g0556300 | - | Detail |
| C1H4g22674 | 4:24,199,083-24,204,954 | + | - | - | LOC_Os03g33570 | Os03g0448500 | - | Detail |
| C1H4g13088 | 4:24,217,160-24,218,551 | - | C2H4g24755 | CX4g033570 | LOC_Os04g46980 | Os04g0556500 | CZOGT1, OscZOGT1, cZOGT1 | Detail |
| C1H4g06970 | 4:24,228,621-24,229,994 | - | C2H4g02919 | CX4g033013 | LOC_Os04g46990 | Os04g0556600 | CZOGT2, OscZOGT2, cZOGT2 | Detail |
| C1H4g31399 | 4:24,237,315-24,239,372 | - | C2H4g05058 | CX4g036272 | LOC_Os04g47010 | Os04g0556900 | - | Detail |
| C1H4g30664 | 4:24,240,765-24,243,331 | + | C2H4g30487 | CX4g035709 | LOC_Os04g47020 | Os04g0557000 | - | Detail |
| C1H4g04431 | 4:24,256,105-24,258,066 | - | C2H4g19992 | CX4g035060 | LOC_Os04g47040 | Os04g0557200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g032076 | 4:12,067,500-12,069,685 | - | C1H4g26434 | C2H4g28282 | LOC_Os04g23700 | Os04g0303100 | SDRLK-24 | Detail |
| CX4g034370 | 4:12,084,884-12,087,394 | - | C1H4g26434 | C2H4g16095 | LOC_Os04g23760 | Os04g0303100 | SDRLK-24 | Detail |
| CX4g033015 | 4:12,090,004-12,092,095 | + | C1H4g21824 | C2H4g05430 | LOC_Os04g23820 | Os04g0303900 | - | Detail |
| CX4g035976 | 4:12,092,788-12,097,896 | - | C1H4g20117 | C2H4g23748 | LOC_Os04g23830 | Os04g0303950 | - | Detail |
| CX4g033018 | 4:12,104,831-12,106,942 | - | C1H4g14531 | C2H4g14626 | LOC_Os04g23849 | Os04g0304000 | - | Detail |
| CX4g031770 | 4:12,116,700-12,116,849 | + | - | - | LOC_Os12g33650 | Os11g0476333 | - | Detail |
| CX4g032002 | 4:12,123,960-12,135,329 | - | C1H4g03483 | C2H4g21835 | LOC_Os04g23890 | Os04g0304200 | PHOT2, OsPHOT2, OsNPH1b | Detail |
| CX4g035769 | 4:12,151,820-12,152,110 | - | - | - | - | - | - | Detail |
| CX4g031448 | 4:12,158,093-12,158,323 | + | - | - | - | - | - | Detail |
| CX4g034278 | 4:12,167,717-12,169,827 | + | C1H4g29080 | C2H4g30545 | LOC_Os04g23910 | Os04g0304400 | OsMADS25 | Detail |
| CX4g032911 | 4:12,177,015-12,177,377 | + | - | - | - | - | - | Detail |
| CX4g033236 | 4:12,186,171-12,187,387 | + | - | - | LOC_Os04g24110 | Os04g0305700 | - | Detail |
| CX4g034384 | 4:12,189,405-12,189,626 | - | - | - | LOC_Os12g31485 | Os10g0399901 | - | Detail |
| CX4g035152 | 4:12,226,568-12,227,386 | + | - | - | LOC_Os04g24140 | Os04g0306400 | - | Detail |
| CX4g034796 | 4:12,236,097-12,236,312 | + | - | - | - | Os02g0188201 | - | Detail |
| CX4g035750 | 4:12,239,380-12,239,964 | - | C1H4g25334 | C2H4g10003 | - | Os04g0306750 | - | Detail |
| CX4g032718 | 4:12,241,890-12,251,031 | - | C1H4g25334 | C2H4g08480 | LOC_Os04g24170 | Os04g0306800 | - | Detail |
| CX4g033768 | 4:12,257,387-12,263,038 | + | C1H4g27699 | C2H4g09830 | LOC_Os04g24180 | Os04g0307200 | - | Detail |
| CX4g034746 | 4:12,272,686-12,278,512 | - | C1H4g04495 | C2H4g23571 | LOC_Os09g01375 | Os04g0206200 | - | Detail |
| CX4g035129 | 4:12,314,951-12,319,392 | + | C1H4g00825 | C2H4g00695 | LOC_Os04g24300 | Os04g0308100 | - | Detail |