| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g27186 | 12:8,027,831-8,030,743 | - | - | - | - | - | - | Detail |
| C1H12g22810 | 12:8,032,441-8,033,926 | - | C2H3g23130 | - | - | - | - | Detail |
| C1H12g30337 | 12:8,046,615-8,050,263 | + | C2H12g15577 | CX12g015656 | LOC_Os12g16620 | - | - | Detail |
| C1H12g12690 | 12:8,062,533-8,063,063 | + | C2H12g13804 | CX12g016493 | LOC_Os12g16640 | Os12g0267100 | - | Detail |
| C1H12g01774 | 12:8,065,294-8,065,512 | - | - | - | - | - | - | Detail |
| C1H12g04576 | 12:8,065,437-8,074,333 | + | C2H12g25263 | CX12g016493 | LOC_Os12g16650 | Os12g0267200 | - | Detail |
| C1H12g20271 | 12:8,081,573-8,081,926 | + | - | - | - | - | - | Detail |
| C1H12g26358 | 12:8,081,955-8,082,293 | + | C2H12g29205 | CX12g015504 | LOC_Os12g16670 | Os12g0267500 | - | Detail |
| C1H12g26040 | 12:8,086,905-8,092,004 | - | C2H5g06041 | CX9g058196 | LOC_Os10g29274 | Os10g0428200 | - | Detail |
| C1H12g24303 | 12:8,098,217-8,098,549 | + | C2H12g22341 | CX12g016418 | LOC_Os12g16370 | - | - | Detail |
| C1H12g20439 | 12:8,103,063-8,105,960 | + | C2H12g01086 | CX12g016003 | LOC_Os12g16690 | Os12g0267900 | - | Detail |
| C1H12g24834 | 12:8,116,448-8,118,408 | - | C2H12g04535 | CX12g018224 | LOC_Os12g16720 | Os12g0268000 | SL, OsSL, CYP71P1, LLM1, CYP71A1, T5H | Detail |
| C1H12g27646 | 12:8,194,063-8,199,131 | - | C2H12g04709 | CX12g016443 | LOC_Os12g17070 | - | - | Detail |
| C1H12g23758 | 12:8,214,290-8,217,091 | + | C2H12g27718 | CX12g015910 | LOC_Os12g17080 | Os12g0270200 | OGR1, ogr1 | Detail |
| C1H12g29906 | 12:8,219,778-8,221,352 | - | C2H12g03089 | CX12g018649 | LOC_Os12g17090 | Os12g0270300 | - | Detail |
| C1H12g00865 | 12:8,235,806-8,236,450 | - | C2H12g03089 | CX12g016852 | LOC_Os12g17090 | Os12g0270675 | - | Detail |
| C1H12g14089 | 12:8,252,859-8,254,623 | - | C2H12g03089 | CX12g016852 | LOC_Os12g17140 | Os12g0270675 | - | Detail |
| C1H12g01259 | 12:8,274,379-8,275,645 | - | - | - | - | - | - | Detail |
| C1H12g31898 | 12:8,277,268-8,279,819 | + | - | - | - | Os12g0231600 | - | Detail |
| C1H12g17449 | 12:8,295,784-8,297,542 | - | C2H12g14706 | CX12g017972 | LOC_Os12g17160 | Os12g0270900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g032076 | 4:12,067,500-12,069,685 | - | C1H4g26434 | C2H4g28282 | LOC_Os04g23700 | Os04g0303100 | SDRLK-24 | Detail |
| CX4g034370 | 4:12,084,884-12,087,394 | - | C1H4g26434 | C2H4g16095 | LOC_Os04g23760 | Os04g0303100 | SDRLK-24 | Detail |
| CX4g033015 | 4:12,090,004-12,092,095 | + | C1H4g21824 | C2H4g05430 | LOC_Os04g23820 | Os04g0303900 | - | Detail |
| CX4g035976 | 4:12,092,788-12,097,896 | - | C1H4g20117 | C2H4g23748 | LOC_Os04g23830 | Os04g0303950 | - | Detail |
| CX4g033018 | 4:12,104,831-12,106,942 | - | C1H4g14531 | C2H4g14626 | LOC_Os04g23849 | Os04g0304000 | - | Detail |
| CX4g031770 | 4:12,116,700-12,116,849 | + | - | - | LOC_Os12g33650 | Os11g0476333 | - | Detail |
| CX4g032002 | 4:12,123,960-12,135,329 | - | C1H4g03483 | C2H4g21835 | LOC_Os04g23890 | Os04g0304200 | PHOT2, OsPHOT2, OsNPH1b | Detail |
| CX4g035769 | 4:12,151,820-12,152,110 | - | - | - | - | - | - | Detail |
| CX4g031448 | 4:12,158,093-12,158,323 | + | - | - | - | - | - | Detail |
| CX4g034278 | 4:12,167,717-12,169,827 | + | C1H4g29080 | C2H4g30545 | LOC_Os04g23910 | Os04g0304400 | OsMADS25 | Detail |
| CX4g032911 | 4:12,177,015-12,177,377 | + | - | - | - | - | - | Detail |
| CX4g033236 | 4:12,186,171-12,187,387 | + | - | - | LOC_Os04g24110 | Os04g0305700 | - | Detail |
| CX4g034384 | 4:12,189,405-12,189,626 | - | - | - | LOC_Os12g31485 | Os10g0399901 | - | Detail |
| CX4g035152 | 4:12,226,568-12,227,386 | + | - | - | LOC_Os04g24140 | Os04g0306400 | - | Detail |
| CX4g034796 | 4:12,236,097-12,236,312 | + | - | - | - | Os02g0188201 | - | Detail |
| CX4g035750 | 4:12,239,380-12,239,964 | - | C1H4g25334 | C2H4g10003 | - | Os04g0306750 | - | Detail |
| CX4g032718 | 4:12,241,890-12,251,031 | - | C1H4g25334 | C2H4g08480 | LOC_Os04g24170 | Os04g0306800 | - | Detail |
| CX4g033768 | 4:12,257,387-12,263,038 | + | C1H4g27699 | C2H4g09830 | LOC_Os04g24180 | Os04g0307200 | - | Detail |
| CX4g034746 | 4:12,272,686-12,278,512 | - | C1H4g04495 | C2H4g23571 | LOC_Os09g01375 | Os04g0206200 | - | Detail |
| CX4g035129 | 4:12,314,951-12,319,392 | + | C1H4g00825 | C2H4g00695 | LOC_Os04g24300 | Os04g0308100 | - | Detail |