| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17927 | 3:3,906,340-3,907,266 | + | C2H3g00273 | CX3g028411 | LOC_Os03g08660 | Os03g0185000 | OsSAT2;1 | Detail |
| C1H3g12755 | 3:3,913,491-3,917,007 | - | C2H3g11839 | CX3g025419 | LOC_Os03g08680 | Os03g0185200 | - | Detail |
| C1H3g28231 | 3:3,920,806-3,921,966 | - | C2H3g29116 | CX3g025760 | LOC_Os03g08690 | Os03g0185400 | - | Detail |
| C1H3g00405 | 3:3,922,008-3,922,334 | - | C2H3g20267 | CX3g025419 | LOC_Os03g08680 | Os03g0185200 | - | Detail |
| C1H3g23204 | 3:3,924,070-3,930,584 | + | C2H3g02824 | CX3g030578 | LOC_Os03g08700 | Os03g0185500 | - | Detail |
| C1H3g14315 | 3:3,931,053-3,931,430 | + | C2H3g03896 | CX3g029404 | LOC_Os03g08710 | Os03g0185600 | - | Detail |
| C1H3g08110 | 3:3,933,849-3,935,207 | - | C2H3g03932 | CX3g029210 | LOC_Os03g08720 | Os03g0185700 | - | Detail |
| C1H3g08230 | 3:3,937,303-3,941,289 | + | C2H3g26196 | CX3g028148 | LOC_Os03g08730 | Os03g0186100 | - | Detail |
| C1H3g25573 | 3:3,954,427-3,959,552 | + | C2H3g17224 | CX3g031324 | LOC_Os03g08740 | Os03g0186500 | - | Detail |
| C1H3g14880 | 3:3,960,777-3,962,645 | - | C2H3g18825 | CX3g029023 | LOC_Os03g08754 | Os03g0186600 | OsMDP1, OsMADS47 | Detail |
| C1H3g19276 | 3:3,966,489-3,967,313 | - | C2H3g02473 | CX3g029023 | LOC_Os03g08754 | Os03g0186600 | OsMDP1, OsMADS47 | Detail |
| C1H3g04910 | 3:3,972,864-3,976,511 | + | C2H3g28859 | CX3g029172 | LOC_Os03g08770 | Os03g0186800 | - | Detail |
| C1H3g01713 | 3:3,981,399-3,982,721 | + | C2H3g12420 | CX3g026841 | LOC_Os03g08790 | Os03g0186900 | OsAP25 | Detail |
| C1H3g01138 | 3:3,983,504-3,985,286 | - | C2H3g16083 | CX3g028992 | LOC_Os03g08800 | Os03g0186950 | - | Detail |
| C1H3g25676 | 3:3,985,547-3,987,944 | + | C2H3g01321 | CX3g028590 | LOC_Os03g08810 | Os03g0187000 | - | Detail |
| C1H3g24115 | 3:3,992,222-4,001,378 | + | C2H3g18803 | CX3g028907 | LOC_Os03g08820 | Os03g0187100 | - | Detail |
| C1H3g08043 | 3:4,002,500-4,011,067 | + | C2H3g23594 | CX3g027040 | LOC_Os03g08830 | Os03g0187300 | - | Detail |
| C1H3g17315 | 3:4,011,333-4,011,896 | - | C2H3g16918 | - | LOC_Os03g08834 | Os03g0187350 | - | Detail |
| C1H3g31610 | 3:4,014,728-4,017,165 | + | C2H3g02517 | CX3g027060 | LOC_Os03g08840 | Os03g0187400 | - | Detail |
| C1H3g08919 | 3:4,025,767-4,028,539 | - | C2H3g15703 | CX3g030287 | LOC_Os03g08850 | Os03g0187500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g036392 | 4:8,415,807-8,423,134 | + | C1H4g06530 | C2H4g16796 | LOC_Os04g17050 | Os04g0244400 | - | Detail |
| CX4g033261 | 4:8,424,031-8,432,915 | + | C1H4g03282 | C2H4g15471 | LOC_Os04g17064 | Os04g0244500 | - | Detail |
| CX4g033837 | 4:8,439,100-8,439,853 | - | C1H4g00844 | C2H4g22629 | LOC_Os04g17100 | Os04g0244800 | - | Detail |
| CX4g033919 | 4:8,494,937-8,495,428 | - | - | - | - | - | - | Detail |
| CX4g036278 | 4:8,527,120-8,527,350 | - | - | - | - | - | - | Detail |
| CX4g033663 | 4:8,597,498-8,597,863 | + | - | - | LOC_Os04g17640 | - | - | Detail |
| CX4g035132 | 4:8,633,425-8,634,138 | - | - | - | - | - | - | Detail |
| CX4g033363 | 4:8,637,219-8,643,496 | - | C1H4g07475 | C2H4g17703 | LOC_Os04g17650 | Os04g0249500 | OsSUS7 | Detail |
| CX4g032666 | 4:8,655,239-8,658,498 | - | C1H4g12276 | C2H4g28644 | LOC_Os04g17660 | Os04g0249600 | STR6, OsHAC1;2, OsStr6, OsRhST, RLD | Detail |
| CX4g036092 | 4:8,661,785-8,662,072 | - | - | - | - | - | - | Detail |
| CX4g031627 | 4:8,690,124-8,690,327 | - | - | - | - | - | - | Detail |
| CX4g035235 | 4:8,741,171-8,741,442 | + | - | - | - | - | - | Detail |
| CX4g036578 | 4:8,743,401-8,749,959 | + | C1H4g19970 | C2H4g18602 | LOC_Os04g17700 | Os04g0250700 | - | Detail |
| CX4g032006 | 4:8,758,629-8,758,811 | - | - | - | - | - | - | Detail |
| CX4g035388 | 4:8,762,443-8,763,259 | - | C1H4g10578 | C2H4g09941 | - | Os04g0251825 | - | Detail |
| CX4g032583 | 4:8,764,375-8,764,831 | - | - | - | - | - | - | Detail |
| CX4g035352 | 4:8,770,127-8,770,708 | + | - | - | - | - | - | Detail |
| CX4g036369 | 4:8,912,278-8,930,564 | - | C1H4g05815 | C2H4g01240 | LOC_Os04g18010 | Os04g0252200 | - | Detail |
| CX4g034469 | 4:8,944,594-8,959,933 | - | C1H4g20695 | C2H4g12300 | LOC_Os04g18030 | Os04g0252400 | - | Detail |
| CX4g035702 | 4:8,963,750-8,964,097 | + | - | - | - | Os01g0894075 | - | Detail |