| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01980 | 3:28,769,869-28,772,490 | - | C1H3g09903 | CX3g026536 | LOC_Os03g55320 | Os03g0761100 | - | Detail |
| C2H3g06672 | 3:28,774,318-28,777,794 | - | C1H3g13690 | CX3g026537 | LOC_Os03g55330 | Os03g0761200 | - | Detail |
| C2H3g12099 | 3:28,793,894-28,798,830 | + | C1H3g30024 | CX3g028991 | LOC_Os03g55360 | Os03g0761700 | - | Detail |
| C2H3g13639 | 3:28,801,419-28,805,273 | + | C1H3g06743 | CX3g030441 | LOC_Os03g55380 | Os03g0761900 | - | Detail |
| C2H3g22708 | 3:28,807,938-28,813,613 | - | C1H3g04781 | CX3g027555 | LOC_Os03g55389 | Os03g0762000 | HD6, Hd6, Hd6(t)*, OsCKA2, OSCKA2 | Detail |
| C2H3g06124 | 3:28,815,348-28,816,132 | - | C1H3g13239 | CX3g029923 | LOC_Os03g55400 | Os03g0762100 | - | Detail |
| C2H3g03334 | 3:28,824,236-28,825,529 | + | C1H3g15054 | CX3g027273 | LOC_Os03g55410 | Os03g0762300 | - | Detail |
| C2H3g28441 | 3:28,829,093-28,831,783 | + | C1H3g30848 | CX3g028085 | LOC_Os03g55420 | Os03g0762400 | - | Detail |
| C2H3g23566 | 3:28,836,777-28,837,357 | + | C1H3g21651 | CX3g025152 | LOC_Os07g02460 | Os03g0206400 | - | Detail |
| C2H3g15621 | 3:28,837,367-28,837,765 | + | - | - | LOC_Os03g55430 | Os03g0762500 | - | Detail |
| C2H3g21236 | 3:28,841,343-28,843,221 | - | C1H3g30412 | CX3g028267 | LOC_Os03g55450 | Os03g0762700 | - | Detail |
| C2H3g28904 | 3:28,851,569-28,855,786 | + | C1H3g31602 | CX3g027974 | LOC_Os03g55470 | Os03g0762900 | - | Detail |
| C2H3g20218 | 3:28,861,702-28,866,046 | + | C1H3g12054 | CX3g028419 | LOC_Os03g55490 | Os03g0763000 | - | Detail |
| C2H3g15832 | 3:28,890,305-28,892,884 | + | C1H3g10528 | CX3g027285 | LOC_Os03g55530 | Os03g0764000 | GSE3 | Detail |
| C2H3g26472 | 3:28,905,764-28,912,939 | - | C1H3g07992 | CX3g027062 | LOC_Os03g55560 | Os03g0764300 | OstMAPKKK5 | Detail |
| C2H3g25717 | 3:28,919,148-28,926,059 | + | C1H3g08783 | CX3g027539 | LOC_Os03g55570 | Os03g0764550 | - | Detail |
| C2H3g13812 | 3:28,935,297-28,937,445 | + | C1H3g17565 | CX3g029766 | LOC_Os03g55590 | Os03g0764600 | OsHHO3 | Detail |
| C2H3g16680 | 3:28,942,582-28,947,621 | + | C1H3g10682 | CX3g030582 | LOC_Os03g55600 | Os03g0764800 | SAPK8, OsSAPK8 | Detail |
| C2H3g01981 | 3:28,965,418-28,968,051 | + | C1H3g29826 | CX3g027424 | LOC_Os03g55620 | Os03g0765000 | - | Detail |
| C2H3g10671 | 3:28,969,609-28,972,477 | + | C1H3g07713 | CX3g029687 | LOC_Os03g55630 | Os03g0765100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035923 | 4:5,687,807-5,688,151 | - | - | - | - | - | - | Detail |
| CX4g035354 | 4:5,691,812-5,692,003 | - | - | - | - | - | - | Detail |
| CX4g033253 | 4:5,697,867-5,699,960 | - | C1H4g02299 | C2H4g10370 | - | - | - | Detail |
| CX4g035299 | 4:5,705,225-5,708,023 | - | C1H4g23201 | C2H4g26263 | LOC_Os04g11660 | Os04g0193300 | - | Detail |
| CX4g035078 | 4:5,708,510-5,708,689 | + | - | - | - | - | - | Detail |
| CX4g035293 | 4:5,728,107-5,730,521 | - | - | - | - | - | - | Detail |
| CX4g031935 | 4:5,736,918-5,741,691 | + | C1H4g01782 | C2H4g23687 | LOC_Os04g11640 | Os04g0193200 | - | Detail |
| CX4g036331 | 4:5,765,666-5,765,881 | - | - | - | - | - | - | Detail |
| CX4g033727 | 4:5,782,322-5,786,053 | + | C1H4g27268 | C2H4g08740 | LOC_Os04g11760 | Os04g0193950 | - | Detail |
| CX4g034119 | 4:5,807,951-5,814,350 | + | C1H4g00127 | C2H4g24115 | - | - | - | Detail |
| CX4g033339 | 4:5,817,088-5,817,330 | + | C1H4g24522 | - | LOC_Os04g11800 | Os04g0194400 | - | Detail |
| CX4g035376 | 4:5,820,005-5,821,282 | + | C1H4g31455 | C2H4g13106 | LOC_Os04g11810 | Os04g0194466 | - | Detail |
| CX4g032821 | 4:5,822,968-5,829,450 | - | C1H4g11202 | C2H4g01433 | LOC_Os04g11820 | Os04g0194500 | - | Detail |
| CX4g033978 | 4:5,845,841-5,846,386 | - | C1H4g29840 | C2H4g17202 | LOC_Os04g11830 | Os04g0194600 | - | Detail |
| CX4g034386 | 4:5,852,374-5,859,464 | + | C1H4g19431 | C2H4g23993 | LOC_Os04g11880 | Os04g0195000 | - | Detail |
| CX4g032660 | 4:5,864,947-5,866,139 | - | C1H4g23499 | C2H4g26263 | LOC_Os04g11890 | Os04g0195100 | - | Detail |
| CX4g035968 | 4:5,879,243-5,879,778 | + | - | C2H4g11331 | LOC_Os04g11910 | - | - | Detail |
| CX4g032570 | 4:5,885,720-5,885,893 | - | - | - | - | - | - | Detail |
| CX4g035259 | 4:5,898,818-5,901,553 | + | C1H4g19937 | C2H4g08911 | LOC_Os04g11970 | Os04g0196200 | OsASMT2 | Detail |
| CX4g034613 | 4:5,903,274-5,903,720 | + | - | - | - | - | - | Detail |