| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g28847 | 9:14,495,660-14,501,828 | + | C1H9g14790 | CX9g056670 | LOC_Os09g28480 | Os09g0458400 | - | Detail |
| C2H9g06834 | 9:14,527,167-14,527,978 | + | C1H9g30078 | - | LOC_Os09g28520 | Os09g0459200 | SG1, OsSG1 | Detail |
| C2H9g17751 | 9:14,547,384-14,551,872 | - | C1H9g01784 | CX9g056105 | LOC_Os09g28560 | Os09g0459600 | - | Detail |
| C2H9g06752 | 9:14,555,807-14,567,696 | + | C1H9g28087 | CX9g057640 | LOC_Os09g28570 | Os09g0459800 | - | Detail |
| C2H9g25937 | 9:14,568,988-14,570,284 | - | C1H9g15128 | CX9g055374 | - | Os09g0459900 | - | Detail |
| C2H9g01353 | 9:14,575,563-14,576,426 | + | C1H9g20930 | CX9g056394 | LOC_Os09g28600 | Os09g0460100 | - | Detail |
| C2H9g17816 | 9:14,579,147-14,588,717 | + | C1H9g17836 | CX9g055971 | LOC_Os09g28610 | Os09g0460200 | - | Detail |
| C2H9g21518 | 9:14,592,660-14,593,598 | + | C1H9g11334 | CX9g055140 | LOC_Os09g28640 | Os09g0460500 | - | Detail |
| C2H9g29988 | 9:14,596,327-14,597,068 | - | - | - | - | - | - | Detail |
| C2H9g26252 | 9:14,598,004-14,598,942 | + | C1H9g08722 | CX9g055140 | LOC_Os09g28650 | Os09g0460700 | - | Detail |
| C2H9g05249 | 9:14,628,687-14,629,661 | - | C1H9g31584 | CX9g055140 | LOC_Os09g28750 | Os09g0462200 | - | Detail |
| C2H9g03017 | 9:14,629,957-14,630,593 | - | C1H9g31193 | - | - | Os09g0462301 | - | Detail |
| C2H9g27701 | 9:14,634,127-14,636,646 | + | C1H9g18452 | CX9g057311 | LOC_Os09g28770 | Os09g0462400 | OsMATL2, OspPLAIIeta, OspPLA-IIalpha | Detail |
| C2H9g19629 | 9:14,637,145-14,639,254 | + | C1H9g29610 | CX9g056435 | LOC_Os09g28780 | - | - | Detail |
| C2H9g05705 | 9:14,650,276-14,654,133 | + | C1H9g28013 | CX9g055048 | LOC_Os09g28810 | Os09g0462700 | - | Detail |
| C2H9g21321 | 9:14,655,361-14,655,770 | + | C1H9g15723 | - | - | Os09g0462850 | - | Detail |
| C2H9g19364 | 9:14,657,776-14,660,369 | - | C1H9g15089 | CX9g057216 | LOC_Os09g28830 | Os09g0462875 | - | Detail |
| C2H9g06754 | 9:14,662,217-14,665,042 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | Os09g0463100 | - | Detail |
| C2H9g23768 | 9:14,665,134-14,667,009 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | - | - | Detail |
| C2H9g26932 | 9:14,677,261-14,679,579 | - | C1H9g16758 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030851 | 3:33,290,992-33,293,926 | - | C1H3g07991 | C2H3g19461 | LOC_Os03g63710 | Os03g0854100 | - | Detail |
| CX3g029131 | 3:33,295,467-33,297,645 | - | C1H3g26847 | C2H3g19461 | LOC_Os03g63720 | Os03g0854200 | - | Detail |
| CX3g030107 | 3:33,297,957-33,300,844 | + | C1H3g06335 | C2H3g12825 | LOC_Os03g63730 | Os03g0854300 | - | Detail |
| CX3g028502 | 3:33,301,710-33,302,078 | - | - | C2H3g15962 | LOC_Os03g63740 | Os03g0854400 | - | Detail |
| CX3g030892 | 3:33,303,603-33,306,932 | + | C1H3g09693 | C2H3g05253 | LOC_Os03g63750 | Os03g0854500 | - | Detail |
| CX3g029838 | 3:33,309,427-33,310,433 | - | C1H3g19243 | C2H3g28167 | LOC_Os03g63760 | Os03g0854600 | - | Detail |
| CX3g026422 | 3:33,320,209-33,323,359 | - | C1H3g21186 | C2H3g30198 | LOC_Os03g63770 | Os03g0854800 | - | Detail |
| CX3g028349 | 3:33,325,063-33,325,389 | - | - | - | - | - | - | Detail |
| CX3g029874 | 3:33,335,934-33,340,283 | + | C1H3g13485 | C2H3g14845 | LOC_Os03g63810 | Os03g0855100 | OsWRKY80 | Detail |
| CX3g027785 | 3:33,357,829-33,358,017 | + | - | - | - | - | - | Detail |
| CX3g029132 | 3:33,364,540-33,365,655 | + | C1H3g14280 | C2H3g28127 | LOC_Os03g63850 | Os03g0855500 | - | Detail |
| CX3g027978 | 3:33,366,406-33,369,833 | + | C1H3g01539 | C2H3g23266 | LOC_Os03g63860 | Os03g0855600 | - | Detail |
| CX3g028921 | 3:33,374,376-33,374,642 | + | C1H3g03427 | C2H3g05415 | LOC_Os03g63890 | Os03g0252900 | - | Detail |
| CX3g027688 | 3:33,377,251-33,378,354 | + | C1H3g10625 | C2H3g09898 | LOC_Os03g63900 | Os03g0856000 | - | Detail |
| CX3g027652 | 3:33,380,652-33,381,599 | - | C1H3g26452 | - | LOC_Os08g09610 | Os08g0195400 | - | Detail |
| CX3g031335 | 3:33,382,187-33,386,786 | + | C1H3g25641 | C2H3g04375 | LOC_Os03g63910 | Os03g0856150 | - | Detail |
| CX3g030971 | 3:33,388,690-33,393,236 | + | C1H3g17906 | - | LOC_Os03g63920 | Os03g0856200 | OsKu80 | Detail |
| CX3g030579 | 3:33,393,817-33,395,848 | - | C1H3g22746 | C2H3g28643 | LOC_Os03g63930 | Os03g0856300 | - | Detail |
| CX3g028093 | 3:33,398,886-33,405,339 | + | C1H3g30692 | C2H3g16257 | LOC_Os03g63940 | Os03g0856400 | - | Detail |
| CX3g031181 | 3:33,406,509-33,408,028 | + | C1H3g30692 | C2H3g23494 | LOC_Os03g63950 | Os03g0856500 | - | Detail |