| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30733 | 3:3,265,574-3,267,124 | + | C2H3g06080 | CX3g027561 | LOC_Os03g07330 | Os03g0169300 | - | Detail |
| C1H3g17744 | 3:3,268,862-3,269,633 | - | C2H3g03131 | CX3g029153 | LOC_Os03g07340 | Os03g0169400 | - | Detail |
| C1H3g09565 | 3:3,269,930-3,274,546 | + | C2H3g06080 | CX3g030421 | LOC_Os03g07350 | Os03g0169500 | OsCSLA4 | Detail |
| C1H3g30713 | 3:3,279,687-3,282,410 | + | C2H3g15611 | CX3g029943 | LOC_Os03g07360 | Os03g0169600 | RDD4, OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12 | Detail |
| C1H3g07573 | 3:3,285,332-3,286,936 | - | C2H3g04475 | CX3g029455 | LOC_Os03g07370 | Os03g0169800 | WSL9 | Detail |
| C1H3g28123 | 3:3,288,651-3,290,857 | - | C2H3g13284 | CX3g026502 | LOC_Os03g07380 | Os03g0169900 | - | Detail |
| C1H3g30140 | 3:3,296,603-3,296,968 | - | C2H3g19051 | CX3g030142 | LOC_Os03g07400 | Os03g0170100 | - | Detail |
| C1H3g19291 | 3:3,300,332-3,303,968 | + | C2H3g20350 | CX3g026147 | LOC_Os03g07420 | Os03g0170300 | - | Detail |
| C1H3g10171 | 3:3,304,680-3,308,519 | - | C2H3g22587 | CX3g030033 | LOC_Os03g07430 | Os03g0170400 | OsRLCK102 | Detail |
| C1H3g24740 | 3:3,313,654-3,314,211 | - | C2H3g17639 | CX3g029150 | LOC_Os03g07440 | Os03g0170500 | - | Detail |
| C1H3g30202 | 3:3,320,822-3,323,552 | - | C2H3g04350 | CX3g026337 | LOC_Os03g07450 | Os03g0170600 | - | Detail |
| C1H3g13830 | 3:3,329,053-3,329,997 | + | C2H3g02647 | CX3g025444 | LOC_Os03g07470 | Os03g0170800 | - | Detail |
| C1H3g13288 | 3:3,332,199-3,338,105 | - | C2H3g25317 | CX3g025078 | LOC_Os03g07480 | Os03g0170900 | - | Detail |
| C1H3g19778 | 3:3,347,153-3,347,814 | - | C2H3g08560 | CX3g027135 | LOC_Os03g07510 | Os03g0171300 | PGL1, ILI6 | Detail |
| C1H3g11183 | 3:3,364,907-3,366,202 | + | C2H3g08984 | CX3g026056 | LOC_Os03g07530 | Os03g0171600 | - | Detail |
| C1H3g20949 | 3:3,376,558-3,377,120 | + | C2H3g13809 | CX3g031164 | LOC_Os03g07540 | Os03g0171700 | OsbHLH153 | Detail |
| C1H3g01760 | 3:3,385,229-3,389,074 | + | C2H3g25444 | CX3g025564 | LOC_Os03g07570 | Os03g0171900 | - | Detail |
| C1H3g16730 | 3:3,390,361-3,395,122 | + | C2H3g13937 | CX3g028125 | LOC_Os03g07580 | Os03g0172000 | - | Detail |
| C1H3g20330 | 3:3,399,164-3,399,409 | + | C2H3g23028 | CX3g030853 | LOC_Os03g07590 | Os03g0172100 | - | Detail |
| C1H3g07122 | 3:3,400,003-3,403,602 | - | C2H3g09147 | CX3g029415 | LOC_Os03g07600 | Os03g0172200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030851 | 3:33,290,992-33,293,926 | - | C1H3g07991 | C2H3g19461 | LOC_Os03g63710 | Os03g0854100 | - | Detail |
| CX3g029131 | 3:33,295,467-33,297,645 | - | C1H3g26847 | C2H3g19461 | LOC_Os03g63720 | Os03g0854200 | - | Detail |
| CX3g030107 | 3:33,297,957-33,300,844 | + | C1H3g06335 | C2H3g12825 | LOC_Os03g63730 | Os03g0854300 | - | Detail |
| CX3g028502 | 3:33,301,710-33,302,078 | - | - | C2H3g15962 | LOC_Os03g63740 | Os03g0854400 | - | Detail |
| CX3g030892 | 3:33,303,603-33,306,932 | + | C1H3g09693 | C2H3g05253 | LOC_Os03g63750 | Os03g0854500 | - | Detail |
| CX3g029838 | 3:33,309,427-33,310,433 | - | C1H3g19243 | C2H3g28167 | LOC_Os03g63760 | Os03g0854600 | - | Detail |
| CX3g026422 | 3:33,320,209-33,323,359 | - | C1H3g21186 | C2H3g30198 | LOC_Os03g63770 | Os03g0854800 | - | Detail |
| CX3g028349 | 3:33,325,063-33,325,389 | - | - | - | - | - | - | Detail |
| CX3g029874 | 3:33,335,934-33,340,283 | + | C1H3g13485 | C2H3g14845 | LOC_Os03g63810 | Os03g0855100 | OsWRKY80 | Detail |
| CX3g027785 | 3:33,357,829-33,358,017 | + | - | - | - | - | - | Detail |
| CX3g029132 | 3:33,364,540-33,365,655 | + | C1H3g14280 | C2H3g28127 | LOC_Os03g63850 | Os03g0855500 | - | Detail |
| CX3g027978 | 3:33,366,406-33,369,833 | + | C1H3g01539 | C2H3g23266 | LOC_Os03g63860 | Os03g0855600 | - | Detail |
| CX3g028921 | 3:33,374,376-33,374,642 | + | C1H3g03427 | C2H3g05415 | LOC_Os03g63890 | Os03g0252900 | - | Detail |
| CX3g027688 | 3:33,377,251-33,378,354 | + | C1H3g10625 | C2H3g09898 | LOC_Os03g63900 | Os03g0856000 | - | Detail |
| CX3g027652 | 3:33,380,652-33,381,599 | - | C1H3g26452 | - | LOC_Os08g09610 | Os08g0195400 | - | Detail |
| CX3g031335 | 3:33,382,187-33,386,786 | + | C1H3g25641 | C2H3g04375 | LOC_Os03g63910 | Os03g0856150 | - | Detail |
| CX3g030971 | 3:33,388,690-33,393,236 | + | C1H3g17906 | - | LOC_Os03g63920 | Os03g0856200 | OsKu80 | Detail |
| CX3g030579 | 3:33,393,817-33,395,848 | - | C1H3g22746 | C2H3g28643 | LOC_Os03g63930 | Os03g0856300 | - | Detail |
| CX3g028093 | 3:33,398,886-33,405,339 | + | C1H3g30692 | C2H3g16257 | LOC_Os03g63940 | Os03g0856400 | - | Detail |
| CX3g031181 | 3:33,406,509-33,408,028 | + | C1H3g30692 | C2H3g23494 | LOC_Os03g63950 | Os03g0856500 | - | Detail |