| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05622 | 3:28,346,036-28,348,511 | - | C1H3g17674 | CX3g025807 | LOC_Os03g53970 | Os03g0750900 | - | Detail |
| C2H3g27227 | 3:28,354,593-28,355,389 | + | C1H3g30640 | CX3g029898 | LOC_Os03g53980 | Os03g0751000 | - | Detail |
| C2H3g03528 | 3:28,356,604-28,357,468 | - | C1H3g24232 | CX3g026633 | LOC_Os03g61780 | Os03g0221500 | - | Detail |
| C2H3g12979 | 3:28,359,296-28,363,917 | + | C1H3g23380 | CX3g029143 | LOC_Os03g53990 | Os03g0751050 | - | Detail |
| C2H3g03358 | 3:28,364,903-28,368,682 | - | C1H3g12600 | CX3g026203 | LOC_Os03g54000 | Os03g0751100 | - | Detail |
| C2H3g04810 | 3:28,374,612-28,380,038 | + | C1H3g23388 | CX3g028805 | LOC_Os03g54040 | Os03g0751400 | - | Detail |
| C2H3g04305 | 3:28,385,441-28,387,151 | + | C1H3g07489 | CX3g027092 | LOC_Os03g54050 | Os03g0751600 | - | Detail |
| C2H3g09716 | 3:28,394,981-28,400,355 | + | C1H3g19762 | CX3g030127 | LOC_Os03g54084 | Os03g0752100 | PHYC | Detail |
| C2H3g05209 | 3:28,400,892-28,404,773 | + | C1H3g25474 | CX3g031059 | LOC_Os03g54091 | Os03g0752200 | OsSPO11-1, OsTOP6A1 | Detail |
| C2H3g18265 | 3:28,406,229-28,407,037 | - | C1H3g21048 | CX3g026511 | LOC_Os03g54100 | Os03g0752300 | TPKA, TPKa, OsTPKa | Detail |
| C2H3g06363 | 3:28,414,853-28,416,272 | + | C1H3g03067 | CX3g025106 | LOC_Os03g54130 | Os03g0752500 | - | Detail |
| C2H3g21077 | 3:28,417,683-28,421,587 | + | C1H3g23694 | CX3g030009 | LOC_Os03g54150 | Os03g0752700 | - | Detail |
| C2H3g04730 | 3:28,422,062-28,426,447 | - | C1H3g26147 | CX3g031002 | LOC_Os03g54160 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C2H3g23019 | 3:28,436,282-28,437,780 | - | C1H3g02420 | CX3g026708 | LOC_Os03g54160 | Os03g0752800 | MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10, RAP1B | Detail |
| C2H3g26552 | 3:28,445,807-28,451,302 | - | C1H3g27451 | CX3g031002 | LOC_Os03g54170 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C2H3g26951 | 3:28,451,740-28,451,928 | - | C1H3g02242 | CX3g031002 | LOC_Os03g54170 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| C2H3g17415 | 3:28,468,540-28,470,560 | - | C1H3g31832 | CX3g030268 | LOC_Os03g54190 | Os03g0753500 | - | Detail |
| C2H3g04287 | 3:28,476,444-28,478,155 | + | C1H3g27471 | CX3g026043 | - | - | - | Detail |
| C2H3g04194 | 3:28,479,652-28,483,328 | - | C1H3g27092 | CX3g027702 | LOC_Os03g54750 | Os03g0754500 | - | Detail |
| C2H3g28760 | 3:28,487,638-28,491,043 | + | C1H3g31483 | CX3g030330 | LOC_Os03g54760 | Os03g0754800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026728 | 3:32,356,336-32,359,487 | - | C1H3g20175 | C2H3g01649 | LOC_Os03g61210 | Os03g0827600 | - | Detail |
| CX3g028357 | 3:32,363,352-32,369,275 | + | C1H3g27004 | C2H3g01744 | LOC_Os03g61220 | Os03g0827700 | - | Detail |
| CX3g027902 | 3:32,376,254-32,376,631 | + | - | - | LOC_Os03g61240 | Os03g0827900 | - | Detail |
| CX3g027932 | 3:32,383,965-32,386,358 | - | C1H3g22127 | C2H3g10218 | LOC_Os03g61310 | Os03g0828800 | SDRLK-60 | Detail |
| CX3g026752 | 3:32,388,276-32,392,769 | - | C1H3g05040 | C2H3g15439 | LOC_Os03g61290 | Os03g0828600 | - | Detail |
| CX3g028380 | 3:32,395,025-32,396,533 | - | C1H3g03156 | C2H3g19505 | LOC_Os03g61280 | Os03g0828500 | - | Detail |
| CX3g030607 | 3:32,411,241-32,412,871 | - | C1H3g12556 | C2H3g03283 | LOC_Os03g61270 | Os03g0828300 | - | Detail |
| CX3g029024 | 3:32,418,419-32,419,966 | - | C1H3g04822 | C2H3g18546 | LOC_Os03g61260 | Os03g0828100 | OsPRPL18 | Detail |
| CX3g026632 | 3:32,423,654-32,426,283 | - | C1H3g26131 | C2H3g08381 | LOC_Os03g61330 | Os03g0829000 | - | Detail |
| CX3g028011 | 3:32,426,890-32,429,475 | - | C1H3g15915 | C2H3g25590 | LOC_Os03g61340 | Os03g0829100 | - | Detail |
| CX3g026642 | 3:32,430,260-32,433,448 | - | C1H3g03162 | C2H3g24696 | LOC_Os03g61360 | Os03g0829200 | - | Detail |
| CX3g026288 | 3:32,435,523-32,436,173 | - | - | - | LOC_Os03g61410 | Os03g0829600 | - | Detail |
| CX3g025854 | 3:32,457,896-32,458,559 | - | C1H3g23073 | C2H3g26647 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| CX3g026702 | 3:32,470,794-32,471,321 | - | - | - | LOC_Os03g61510 | Os03g0830600 | OsPMEI15 | Detail |
| CX3g029618 | 3:32,472,477-32,477,665 | - | C1H3g03284 | C2H3g06697 | LOC_Os03g61540 | Os03g0830900 | - | Detail |
| CX3g028759 | 3:32,481,967-32,483,168 | + | C1H3g14942 | C2H3g08869 | LOC_Os03g61550 | Os03g0831000 | - | Detail |
| CX3g026737 | 3:32,483,734-32,488,801 | - | C1H3g25915 | C2H3g09913 | LOC_Os03g61560 | Os03g0831100 | - | Detail |
| CX3g028619 | 3:32,490,682-32,491,309 | + | C1H3g22820 | C2H3g11440 | LOC_Os03g61570 | Os03g0831200 | GATA12 | Detail |
| CX3g030545 | 3:32,495,573-32,499,083 | + | C1H3g04867 | C2H3g03666 | LOC_Os03g61580 | Os03g0831300 | - | Detail |
| CX3g025585 | 3:32,500,459-32,500,683 | + | C1H3g01186 | C2H3g22160 | LOC_Os03g61590 | Os03g0831400 | - | Detail |