| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g28226 | 4:25,141,928-25,144,517 | - | C1H4g09996 | - | LOC_Os04g49130 | Os04g0580400 | OsSCE3 | Detail |
| C2H4g09701 | 4:25,148,467-25,149,423 | - | - | CX4g035401 | LOC_Os04g49140 | Os04g0580500 | - | Detail |
| C2H4g28180 | 4:25,157,517-25,163,020 | + | C1H4g28417 | CX4g036099 | LOC_Os04g49150 | Os04g0580700 | MADS17, OsMADS17, NMADS3, RMADS213, nmads3 | Detail |
| C2H4g29841 | 4:25,165,360-25,165,848 | - | C1H4g23703 | CX4g031640 | LOC_Os04g49160 | Os04g0580800 | OsRFPH2-6 | Detail |
| C2H4g24583 | 4:25,170,519-25,171,040 | - | - | CX4g034669 | LOC_Os04g49170 | Os04g0580866 | - | Detail |
| C2H4g04279 | 4:25,172,890-25,175,528 | - | C1H8g13175 | CX4g033382 | LOC_Os06g36530 | - | - | Detail |
| C2H4g16797 | 4:25,186,392-25,187,121 | + | C1H4g30271 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C2H4g02021 | 4:25,191,095-25,192,198 | + | C1H4g21644 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C2H4g17595 | 4:25,193,950-25,195,360 | - | C1H4g27247 | CX4g034941 | LOC_Os04g49210 | Os04g0581100 | OsSAH3 | Detail |
| C2H4g22618 | 4:25,205,221-25,207,845 | - | C1H4g19809 | CX4g034701 | LOC_Os04g49220 | Os04g0581300 | - | Detail |
| C2H4g25213 | 4:25,221,044-25,222,318 | - | C1H4g15146 | CX4g035204 | LOC_Os04g49230 | Os04g0581400 | RAVL1 | Detail |
| C2H4g07246 | 4:25,264,468-25,264,665 | + | - | CX4g034172 | - | Os04g0581700 | - | Detail |
| C2H4g27357 | 4:25,266,514-25,267,024 | - | C1H4g26375 | CX4g036477 | LOC_Os04g49260 | Os04g0581800 | - | Detail |
| C2H4g21103 | 4:25,268,952-25,273,054 | - | C1H4g04071 | CX4g033493 | LOC_Os04g49270 | Os04g0582000 | OsDNA2_12 | Detail |
| C2H4g08363 | 4:25,274,439-25,278,081 | - | C1H4g14184 | CX4g033493 | LOC_Os04g49310 | Os04g0582600 | OsDNA2_13 | Detail |
| C2H4g08829 | 4:25,279,421-25,279,981 | - | C1H4g14184 | CX4g033493 | - | - | - | Detail |
| C2H4g18439 | 4:25,281,550-25,287,064 | - | C1H4g22667 | CX4g036138 | LOC_Os04g49320 | Os04g0582700 | OsDNA2_10 | Detail |
| C2H4g11122 | 4:25,288,555-25,288,861 | - | C1H4g13543 | CX4g033723 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| C2H4g27939 | 4:25,288,930-25,290,634 | - | C1H4g13543 | CX4g036138 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| C2H4g27086 | 4:25,293,122-25,293,784 | - | C1H4g24238 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028362 | 3:31,630,356-31,635,954 | - | C1H3g11302 | C2H3g12399 | LOC_Os03g59590 | Os03g0810600 | - | Detail |
| CX3g030481 | 3:31,643,828-31,645,692 | - | C1H3g11617 | C2H3g16986 | LOC_Os03g59600 | Os03g0810700 | - | Detail |
| CX3g028870 | 3:31,646,565-31,648,263 | + | C1H3g30674 | C2H3g19706 | LOC_Os03g59610 | Os03g0810800 | OsABA2 | Detail |
| CX3g027301 | 3:31,649,068-31,652,712 | - | C1H3g01412 | C2H3g30149 | LOC_Os03g59620 | Os03g0810900 | - | Detail |
| CX3g030819 | 3:31,655,256-31,661,592 | + | C1H3g18901 | C2H3g14154 | LOC_Os03g59640 | Os03g0811100 | - | Detail |
| CX3g031200 | 3:31,662,357-31,667,360 | + | C1H3g26787 | C2H3g24154 | LOC_Os03g59650 | Os03g0811200 | - | Detail |
| CX3g028699 | 3:31,670,388-31,672,390 | + | C1H3g09735 | C2H3g07522 | LOC_Os03g59660 | Os03g0811300 | - | Detail |
| CX3g027906 | 3:31,675,007-31,676,357 | + | C1H3g09793 | C2H3g08986 | LOC_Os03g59670 | Os03g0811400 | - | Detail |
| CX3g026137 | 3:31,687,881-31,690,585 | - | C1H3g28609 | C2H3g03566 | LOC_Os03g59680 | Os03g0811500 | - | Detail |
| CX3g029579 | 3:31,692,001-31,692,546 | - | - | - | - | - | - | Detail |
| CX3g028706 | 3:31,696,158-31,697,087 | - | C1H3g20712 | C2H3g09547 | LOC_Os03g59690 | Os03g0811550 | - | Detail |
| CX3g027737 | 3:31,697,801-31,700,301 | - | C1H3g19969 | C2H3g28941 | LOC_Os03g59700 | Os03g0811600 | - | Detail |
| CX3g025510 | 3:31,700,612-31,701,004 | + | C1H3g31741 | C2H3g02470 | LOC_Os03g59710 | Os03g0811700 | - | Detail |
| CX3g025408 | 3:31,702,902-31,703,944 | - | C1H3g19079 | C2H3g05006 | LOC_Os03g59720 | Os03g0811800 | - | Detail |
| CX3g027595 | 3:31,708,997-31,710,920 | + | C1H3g30301 | C2H3g21955 | LOC_Os03g59740 | Os03g0811900 | - | Detail |
| CX3g025682 | 3:31,720,280-31,720,843 | + | - | - | LOC_Os07g30270 | Os03g0199800 | - | Detail |
| CX3g026970 | 3:31,727,750-31,728,313 | + | - | - | LOC_Os07g30270 | Os03g0199800 | - | Detail |
| CX3g028422 | 3:31,739,038-31,752,324 | - | C1H3g19228 | C2H3g19593 | - | Os03g0812000 | - | Detail |
| CX3g025855 | 3:31,759,181-31,760,281 | + | C1H3g24075 | C2H3g16505 | LOC_Os03g59760 | Os03g0812200 | - | Detail |
| CX3g030218 | 3:31,763,895-31,764,530 | + | C1H3g03324 | C2H3g14485 | LOC_Os03g59770 | Os03g0812400 | OsCaML2 | Detail |