| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g04152 | 5:15,668,422-15,668,724 | + | - | CX5g039801 | LOC_Os05g32860 | Os05g0395400 | - | Detail |
| C1H5g20136 | 5:15,684,827-15,689,283 | - | C2H5g25398 | CX5g041092 | LOC_Os05g32880 | Os05g0395600 | - | Detail |
| C1H5g29241 | 5:15,731,282-15,733,099 | - | - | CX5g038356 | LOC_Os05g32960 | Os05g0396900 | - | Detail |
| C1H5g05270 | 5:15,743,955-15,746,412 | - | C2H5g22161 | CX5g036840 | LOC_Os05g32970 | Os05g0397300 | - | Detail |
| C1H5g28580 | 5:15,750,732-15,755,367 | - | C2H5g21572 | CX5g038178 | LOC_Os05g33000 | Os05g0397650 | - | Detail |
| C1H5g17477 | 5:15,756,093-15,763,312 | - | C2H5g14805 | CX5g039927 | LOC_Os05g33020 | Os05g0397700 | - | Detail |
| C1H5g00765 | 5:15,763,530-15,767,601 | + | C2H5g25635 | CX5g039288 | LOC_Os05g33010 | Os05g0397800 | - | Detail |
| C1H5g15753 | 5:15,769,305-15,773,200 | + | C2H5g00092 | CX5g036879 | LOC_Os05g33030 | Os05g0397900 | - | Detail |
| C1H5g11914 | 5:15,773,887-15,774,740 | - | C2H5g20286 | CX5g037239 | LOC_Os05g33040 | Os05g0398000 | OsCYCP1;1 | Detail |
| C1H5g28942 | 5:15,778,249-15,787,068 | - | C2H5g27231 | CX5g037249 | LOC_Os05g33050 | Os05g0398100 | - | Detail |
| C1H5g16303 | 5:15,796,003-15,796,566 | + | C2H5g19259 | - | - | - | - | Detail |
| C1H5g00260 | 5:15,798,658-15,799,198 | - | C2H5g04735 | - | - | - | - | Detail |
| C1H5g19211 | 5:15,807,293-15,811,662 | + | C2H5g14955 | CX5g037475 | LOC_Os05g33080 | Os05g0398800 | - | Detail |
| C1H5g10129 | 5:15,819,352-15,822,632 | + | C2H5g23530 | CX5g036980 | LOC_Os05g33100 | Os05g0399100 | - | Detail |
| C1H5g31879 | 5:15,833,928-15,838,878 | + | C2H5g23530 | CX5g036980 | LOC_Os05g33100 | Os05g0399100 | - | Detail |
| C1H5g23483 | 5:15,840,952-15,843,877 | + | C2H5g00064 | CX5g036980 | LOC_Os05g33110 | Os05g0399200 | - | Detail |
| C1H5g23914 | 5:15,847,401-15,848,534 | + | C2H5g02825 | CX5g041133 | LOC_Os05g33130 | Os05g0399300 | OsChia1b, Cht-2 | Detail |
| C1H5g21497 | 5:15,861,271-15,862,673 | + | C2H5g28257 | CX5g041133 | LOC_Os05g33140 | Os05g0399400 | - | Detail |
| C1H5g31105 | 5:15,899,148-15,900,449 | + | C2H5g05340 | CX5g037858 | LOC_Os05g33150 | Os05g0399700 | OsChia1d, Cht7 | Detail |
| C1H5g18948 | 5:15,900,745-15,901,536 | - | C2H5g17918 | CX5g038227 | LOC_Os05g33160 | Os05g0170300 | OsSGN3b | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029953 | 3:31,504,415-31,507,040 | + | C1H3g05454 | C2H3g07099 | LOC_Os03g59330 | Os03g0808000 | - | Detail |
| CX3g029274 | 3:31,507,483-31,512,642 | - | C1H3g31749 | C2H3g27778 | LOC_Os03g59340 | Os03g0808100 | - | Detail |
| CX3g029533 | 3:31,514,745-31,516,229 | + | C1H3g18325 | C2H3g02177 | LOC_Os03g59350 | Os03g0808200 | - | Detail |
| CX3g028432 | 3:31,520,098-31,521,483 | - | C1H3g13091 | C2H3g01836 | LOC_Os03g59360 | Os03g0808300 | - | Detail |
| CX3g025805 | 3:31,525,346-31,526,396 | - | C1H3g25091 | C2H3g03811 | LOC_Os03g59370 | Os03g0808400 | - | Detail |
| CX3g026329 | 3:31,527,540-31,527,914 | + | - | - | LOC_Os03g59380 | Os03g0808500 | - | Detail |
| CX3g029797 | 3:31,540,740-31,540,889 | - | - | - | - | Os01g0728000 | - | Detail |
| CX3g024996 | 3:31,546,161-31,549,758 | + | C1H3g20305 | C2H3g04526 | LOC_Os03g59390 | Os03g0808600 | OsCPK8 | Detail |
| CX3g029969 | 3:31,558,696-31,563,001 | + | C1H3g10123 | C2H3g07709 | LOC_Os03g59430 | Os03g0808900 | - | Detail |
| CX3g025123 | 3:31,563,870-31,564,430 | - | C1H3g01230 | C2H3g20835 | LOC_Os03g59440 | Os03g0809000 | - | Detail |
| CX3g025915 | 3:31,567,062-31,570,428 | - | C1H3g21680 | C2H3g29438 | LOC_Os03g59450 | Os03g0809100 | - | Detail |
| CX3g029386 | 3:31,571,588-31,573,965 | + | C1H3g00029 | C2H3g20629 | LOC_Os03g59460 | Os03g0809200 | - | Detail |
| CX3g030061 | 3:31,575,197-31,577,980 | - | C1H3g24410 | C2H3g29142 | LOC_Os03g59470 | Os03g0809300 | - | Detail |
| CX3g026207 | 3:31,579,067-31,583,353 | - | C1H3g00154 | C2H3g26798 | LOC_Os03g59480 | Os03g0809400 | - | Detail |
| CX3g029129 | 3:31,588,742-31,593,540 | + | C1H3g24704 | C2H3g14868 | LOC_Os03g59530 | Os03g0809700 | - | Detail |
| CX3g029771 | 3:31,594,164-31,595,278 | - | C1H3g10761 | C2H3g12384 | LOC_Os03g59540 | Os03g0809800 | - | Detail |
| CX3g027672 | 3:31,596,795-31,601,489 | + | C1H3g08226 | C2H3g15000 | LOC_Os03g59550 | Os03g0809900 | OsY14b, Y14b, Tsunagi, RBM8 | Detail |
| CX3g030604 | 3:31,607,773-31,608,831 | + | C1H3g24094 | C2H3g26577 | LOC_Os03g59570 | Os03g0810100 | - | Detail |
| CX3g026718 | 3:31,616,080-31,616,463 | + | - | - | - | - | - | Detail |
| CX3g027297 | 3:31,620,258-31,622,684 | - | C1H3g21092 | C2H3g13200 | LOC_Os03g59580 | Os03g0810300 | - | Detail |