| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g07348 | 5:358,661-367,097 | + | C2H5g18074 | CX5g037999 | LOC_Os05g01690 | Os05g0107300 | - | Detail |
| C1H5g18030 | 5:369,428-381,333 | - | C2H5g27472 | CX5g038302 | LOC_Os05g01700 | Os05g0107600 | - | Detail |
| C1H5g19380 | 5:385,533-391,214 | + | C2H5g16843 | CX5g040021 | LOC_Os05g01710 | Os05g0107700 | - | Detail |
| C1H5g20325 | 5:395,300-397,340 | + | C2H5g11892 | CX5g040582 | LOC_Os05g01730 | Os05g0107900 | - | Detail |
| C1H5g28813 | 5:397,625-402,062 | - | C2H5g21168 | CX5g040580 | LOC_Os05g01750 | Os05g0108000 | - | Detail |
| C1H5g21368 | 5:402,500-406,747 | - | C2H5g06480 | CX5g039887 | LOC_Os05g01760 | Os05g0108100 | - | Detail |
| C1H5g15185 | 5:412,808-417,692 | + | C2H5g09053 | CX5g039387 | LOC_Os05g01780 | Os05g0108300 | - | Detail |
| C1H5g01513 | 5:422,952-425,344 | + | C2H5g04330 | CX5g040070 | LOC_Os05g10980 | Os05g0198700 | - | Detail |
| C1H5g26822 | 5:427,446-429,698 | + | C2H5g29127 | CX5g038883 | LOC_Os05g01810 | Os05g0108600 | - | Detail |
| C1H5g12608 | 5:431,602-433,521 | + | C2H5g11304 | CX5g039990 | LOC_Os05g01820 | Os05g0108800 | - | Detail |
| C1H5g12767 | 5:434,339-435,316 | - | C2H5g10600 | CX5g040088 | LOC_Os05g01900 | Os05g0109100 | - | Detail |
| C1H5g28978 | 5:436,040-438,379 | - | C2H5g20027 | CX5g040088 | LOC_Os05g01830 | Os05g0109100 | - | Detail |
| C1H5g13270 | 5:447,432-453,478 | - | C2H5g16158 | CX5g040571 | LOC_Os05g01910 | Os05g0109600 | - | Detail |
| C1H5g31686 | 5:478,568-478,963 | + | C2H5g30479 | - | LOC_Os05g01950 | Os05g0110100 | - | Detail |
| C1H5g07744 | 5:487,086-496,510 | + | C2H5g05509 | CX5g039239 | LOC_Os05g01970 | Os05g0110300 | - | Detail |
| C1H5g08931 | 5:489,777-491,591 | - | C2H5g14884 | CX5g037835 | - | Os05g0574900 | OsSLRL2 | Detail |
| C1H5g02397 | 5:497,912-503,703 | + | C2H5g28803 | CX5g040128 | LOC_Os05g01990 | Os05g0110500 | OsRH17 | Detail |
| C1H5g00170 | 5:504,039-505,463 | - | C2H5g24617 | CX5g039122 | LOC_Os05g01994 | Os05g0110600 | - | Detail |
| C1H5g17204 | 5:506,122-509,720 | - | C2H5g17611 | CX5g039191 | LOC_Os01g74170 | Os05g0110700 | - | Detail |
| C1H5g02164 | 5:510,904-513,298 | + | C2H5g11449 | CX5g037548 | LOC_Os05g02010 | Os05g0110800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029953 | 3:31,504,415-31,507,040 | + | C1H3g05454 | C2H3g07099 | LOC_Os03g59330 | Os03g0808000 | - | Detail |
| CX3g029274 | 3:31,507,483-31,512,642 | - | C1H3g31749 | C2H3g27778 | LOC_Os03g59340 | Os03g0808100 | - | Detail |
| CX3g029533 | 3:31,514,745-31,516,229 | + | C1H3g18325 | C2H3g02177 | LOC_Os03g59350 | Os03g0808200 | - | Detail |
| CX3g028432 | 3:31,520,098-31,521,483 | - | C1H3g13091 | C2H3g01836 | LOC_Os03g59360 | Os03g0808300 | - | Detail |
| CX3g025805 | 3:31,525,346-31,526,396 | - | C1H3g25091 | C2H3g03811 | LOC_Os03g59370 | Os03g0808400 | - | Detail |
| CX3g026329 | 3:31,527,540-31,527,914 | + | - | - | LOC_Os03g59380 | Os03g0808500 | - | Detail |
| CX3g029797 | 3:31,540,740-31,540,889 | - | - | - | - | Os01g0728000 | - | Detail |
| CX3g024996 | 3:31,546,161-31,549,758 | + | C1H3g20305 | C2H3g04526 | LOC_Os03g59390 | Os03g0808600 | OsCPK8 | Detail |
| CX3g029969 | 3:31,558,696-31,563,001 | + | C1H3g10123 | C2H3g07709 | LOC_Os03g59430 | Os03g0808900 | - | Detail |
| CX3g025123 | 3:31,563,870-31,564,430 | - | C1H3g01230 | C2H3g20835 | LOC_Os03g59440 | Os03g0809000 | - | Detail |
| CX3g025915 | 3:31,567,062-31,570,428 | - | C1H3g21680 | C2H3g29438 | LOC_Os03g59450 | Os03g0809100 | - | Detail |
| CX3g029386 | 3:31,571,588-31,573,965 | + | C1H3g00029 | C2H3g20629 | LOC_Os03g59460 | Os03g0809200 | - | Detail |
| CX3g030061 | 3:31,575,197-31,577,980 | - | C1H3g24410 | C2H3g29142 | LOC_Os03g59470 | Os03g0809300 | - | Detail |
| CX3g026207 | 3:31,579,067-31,583,353 | - | C1H3g00154 | C2H3g26798 | LOC_Os03g59480 | Os03g0809400 | - | Detail |
| CX3g029129 | 3:31,588,742-31,593,540 | + | C1H3g24704 | C2H3g14868 | LOC_Os03g59530 | Os03g0809700 | - | Detail |
| CX3g029771 | 3:31,594,164-31,595,278 | - | C1H3g10761 | C2H3g12384 | LOC_Os03g59540 | Os03g0809800 | - | Detail |
| CX3g027672 | 3:31,596,795-31,601,489 | + | C1H3g08226 | C2H3g15000 | LOC_Os03g59550 | Os03g0809900 | OsY14b, Y14b, Tsunagi, RBM8 | Detail |
| CX3g030604 | 3:31,607,773-31,608,831 | + | C1H3g24094 | C2H3g26577 | LOC_Os03g59570 | Os03g0810100 | - | Detail |
| CX3g026718 | 3:31,616,080-31,616,463 | + | - | - | - | - | - | Detail |
| CX3g027297 | 3:31,620,258-31,622,684 | - | C1H3g21092 | C2H3g13200 | LOC_Os03g59580 | Os03g0810300 | - | Detail |