| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01677 | 3:1,883,766-1,887,423 | - | C1H3g00456 | CX3g025825 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| C2H3g16470 | 3:1,893,023-1,894,552 | + | C1H3g23782 | CX3g025500 | LOC_Os03g04630 | Os03g0139600 | - | Detail |
| C2H3g12777 | 3:1,933,825-1,935,351 | + | C1H3g00353 | CX3g025500 | LOC_Os03g04650 | Os03g0140100 | - | Detail |
| C2H3g27330 | 3:1,940,534-1,942,090 | + | C1H3g25985 | CX3g025500 | LOC_Os03g04660 | Os03g0140200 | CYP96B5, WSL5 | Detail |
| C2H3g29153 | 3:1,951,839-1,953,458 | + | C1H3g15064 | CX3g025500 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| C2H3g12329 | 3:1,955,457-1,958,399 | - | C1H3g07260 | CX3g029016 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| C2H3g13203 | 3:1,964,827-1,965,304 | - | C1H3g31769 | CX3g026380 | - | Os03g0140650 | - | Detail |
| C2H3g17473 | 3:1,987,231-1,988,894 | + | C1H3g10738 | CX3g028112 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| C2H3g05466 | 3:1,992,006-1,992,782 | + | - | - | - | - | - | Detail |
| C2H3g05277 | 3:1,993,925-1,996,800 | + | C1H3g01474 | CX3g029285 | LOC_Os03g04740 | Os03g0140900 | - | Detail |
| C2H3g19470 | 3:1,997,560-1,999,274 | + | C1H3g10114 | CX3g030261 | LOC_Os03g04750 | Os03g0141000 | - | Detail |
| C2H3g09892 | 3:2,001,052-2,004,476 | + | C1H3g00645 | CX3g026884 | LOC_Os03g04770 | Os03g0141200 | OsBMY4 | Detail |
| C2H3g00749 | 3:2,005,294-2,005,643 | - | C1H3g11403 | CX3g028262 | LOC_Os03g04780 | Os03g0286500 | - | Detail |
| C2H3g24267 | 3:2,008,300-2,011,820 | + | C1H3g11848 | CX3g024968 | LOC_Os03g04830 | Os03g0141700 | - | Detail |
| C2H3g24637 | 3:2,014,747-2,017,084 | + | C1H3g03155 | CX3g027335 | LOC_Os03g04840 | Os03g0141800 | - | Detail |
| C2H3g16825 | 3:2,025,016-2,028,837 | + | C1H3g16077 | CX3g027335 | LOC_Os03g04870 | Os03g0142200 | - | Detail |
| C2H3g26010 | 3:2,035,008-2,038,711 | + | C1H3g31558 | CX3g030528 | LOC_Os03g04890 | Os03g0142500 | - | Detail |
| C2H3g05143 | 3:2,039,567-2,040,522 | - | C1H3g10254 | CX3g030147 | LOC_Os03g04900 | Os03g0142600 | Os2R_MYB33 | Detail |
| C2H3g20094 | 3:2,061,134-2,067,861 | + | C1H3g19270 | CX3g030977 | LOC_Os03g04920 | Os03g0142800 | - | Detail |
| C2H3g26910 | 3:2,068,501-2,074,019 | - | C1H3g30404 | CX3g029043 | LOC_Os03g04930 | Os03g0142900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027669 | 3:31,243,799-31,244,422 | - | C1H3g06385 | - | LOC_Os02g39530 | Os02g0608200 | - | Detail |
| CX3g025546 | 3:31,247,754-31,249,319 | + | C1H3g23323 | C2H3g07093 | LOC_Os03g58790 | Os03g0802500 | OsAAA-ATPase1 | Detail |
| CX3g029310 | 3:31,253,405-31,255,200 | + | C1H3g23323 | C2H3g07093 | LOC_Os03g58800 | Os03g0802600 | - | Detail |
| CX3g031125 | 3:31,255,445-31,259,073 | - | C1H3g23165 | C2H3g04258 | LOC_Os03g58810 | Os03g0802700 | - | Detail |
| CX3g026858 | 3:31,260,114-31,265,863 | - | C1H3g24318 | C2H3g14685 | LOC_Os03g58820 | Os03g0802800 | - | Detail |
| CX3g029318 | 3:31,266,734-31,270,465 | - | C1H3g09968 | C2H3g03398 | LOC_Os03g58830 | Os03g0802900 | - | Detail |
| CX3g027749 | 3:31,272,604-31,275,518 | + | C1H3g24192 | C2H3g17483 | LOC_Os03g58840 | Os03g0803000 | - | Detail |
| CX3g026143 | 3:31,280,175-31,280,666 | - | C1H3g22193 | C2H3g08295 | LOC_Os03g58850 | Os03g0803100 | - | Detail |
| CX3g028924 | 3:31,285,426-31,285,680 | - | C1H3g05018 | C2H3g05041 | LOC_Os03g58870 | Os03g0803200 | - | Detail |
| CX3g027844 | 3:31,289,848-31,291,571 | - | C1H3g17883 | C2H3g25525 | LOC_Os03g58890 | Os03g0803500 | - | Detail |
| CX3g029942 | 3:31,297,487-31,311,663 | - | C1H3g08097 | C2H3g20910 | LOC_Os03g58910 | Os03g0803800 | - | Detail |
| CX3g025337 | 3:31,320,709-31,323,222 | + | C1H3g13889 | C2H3g08052 | LOC_Os03g58930 | Os03g0804100 | - | Detail |
| CX3g027592 | 3:31,330,530-31,332,199 | + | C1H3g18947 | C2H3g30090 | LOC_Os03g58940 | Os03g0804200 | - | Detail |
| CX3g024943 | 3:31,335,229-31,340,121 | - | C1H3g08908 | C2H3g10876 | LOC_Os03g58960 | Os03g0804300 | - | Detail |
| CX3g027330 | 3:31,341,940-31,346,975 | + | C1H3g16246 | C2H3g27290 | LOC_Os03g58970 | Os03g0804400 | - | Detail |
| CX3g029362 | 3:31,348,735-31,349,403 | + | C1H3g26409 | C2H3g28657 | LOC_Os03g58980 | Os03g0804500 | OsGLP3-7 | Detail |
| CX3g025687 | 3:31,352,789-31,353,484 | + | C1H3g26409 | C2H3g28657 | LOC_Os03g59010 | Os03g0804700 | - | Detail |
| CX3g028935 | 3:31,354,529-31,359,385 | + | C1H3g07772 | C2H3g08677 | LOC_Os03g59020 | Os03g0804800 | - | Detail |
| CX3g027095 | 3:31,360,698-31,362,512 | - | C1H3g18006 | C2H3g02565 | LOC_Os03g59030 | Os03g0804900 | - | Detail |
| CX3g030857 | 3:31,365,599-31,371,968 | + | C1H3g15435 | C2H3g23943 | LOC_Os03g59040 | Os03g0805100 | - | Detail |