| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g10001 | 3:21,151,217-21,152,786 | + | - | CX3g028471 | - | - | - | Detail |
| C1H3g30883 | 3:21,153,263-21,159,842 | + | C2H3g29952 | CX3g028471 | LOC_Os03g40260 | Os03g0599600 | - | Detail |
| C1H3g13627 | 3:21,161,035-21,163,583 | - | C2H3g19967 | CX3g027014 | LOC_Os03g40270 | Os03g0599800 | OsUAM1, OsRGP1 | Detail |
| C1H3g04627 | 3:21,197,586-21,202,119 | - | C2H3g25694 | CX3g024993 | LOC_Os03g40310 | Os03g0600400 | - | Detail |
| C1H3g22770 | 3:21,215,489-21,219,320 | + | - | CX4g035358 | LOC_Os06g13330 | - | - | Detail |
| C1H3g25700 | 3:21,259,597-21,261,794 | + | C2H3g24621 | CX3g030021 | LOC_Os03g40400 | Os03g0588400 | - | Detail |
| C1H3g22498 | 3:21,265,798-21,267,917 | - | C2H3g14836 | CX3g030088 | LOC_Os03g40410 | Os03g0601100 | - | Detail |
| C1H3g13282 | 3:21,278,712-21,284,032 | + | C2H3g24556 | CX3g025157 | LOC_Os03g40440 | Os03g0601500 | - | Detail |
| C1H3g27087 | 3:21,296,753-21,301,667 | + | C2H3g15462 | CX3g025024 | LOC_Os03g40330 | Os03g0600600 | - | Detail |
| C1H3g31743 | 3:21,377,849-21,381,960 | + | C2H3g30676 | CX3g027969 | LOC_Os03g40540 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C1H3g17649 | 3:21,387,022-21,392,112 | + | C2H3g17661 | CX3g026097 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| C1H3g14588 | 3:21,395,848-21,401,077 | - | C2H3g06081 | CX3g026160 | LOC_Os03g40600 | Os03g0603100 | - | Detail |
| C1H3g26758 | 3:21,465,686-21,469,385 | + | C2H3g09028 | CX3g029684 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| C1H3g15118 | 3:21,525,050-21,525,830 | + | C2H3g19200 | CX3g029136 | - | Os03g0789600 | - | Detail |
| C1H3g27392 | 3:21,538,810-21,539,538 | + | C2H3g23447 | CX3g025313 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| C1H3g29572 | 3:21,541,034-21,546,480 | - | C2H3g01476 | CX3g029068 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| C1H3g11700 | 3:21,581,983-21,586,062 | - | C2H3g22818 | CX3g030298 | LOC_Os03g40840 | Os03g0165900 | - | Detail |
| C1H3g15527 | 3:21,598,760-21,600,762 | - | C2H3g29089 | CX3g025804 | LOC_Os03g40930 | Os03g0606100 | - | Detail |
| C1H3g29161 | 3:21,647,957-21,650,673 | - | C2H3g00163 | CX3g025127 | LOC_Os03g41064 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C1H3g01431 | 3:21,661,606-21,662,082 | - | C2H3g26892 | - | LOC_Os03g41050 | Os03g0607100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027669 | 3:31,243,799-31,244,422 | - | C1H3g06385 | - | LOC_Os02g39530 | Os02g0608200 | - | Detail |
| CX3g025546 | 3:31,247,754-31,249,319 | + | C1H3g23323 | C2H3g07093 | LOC_Os03g58790 | Os03g0802500 | OsAAA-ATPase1 | Detail |
| CX3g029310 | 3:31,253,405-31,255,200 | + | C1H3g23323 | C2H3g07093 | LOC_Os03g58800 | Os03g0802600 | - | Detail |
| CX3g031125 | 3:31,255,445-31,259,073 | - | C1H3g23165 | C2H3g04258 | LOC_Os03g58810 | Os03g0802700 | - | Detail |
| CX3g026858 | 3:31,260,114-31,265,863 | - | C1H3g24318 | C2H3g14685 | LOC_Os03g58820 | Os03g0802800 | - | Detail |
| CX3g029318 | 3:31,266,734-31,270,465 | - | C1H3g09968 | C2H3g03398 | LOC_Os03g58830 | Os03g0802900 | - | Detail |
| CX3g027749 | 3:31,272,604-31,275,518 | + | C1H3g24192 | C2H3g17483 | LOC_Os03g58840 | Os03g0803000 | - | Detail |
| CX3g026143 | 3:31,280,175-31,280,666 | - | C1H3g22193 | C2H3g08295 | LOC_Os03g58850 | Os03g0803100 | - | Detail |
| CX3g028924 | 3:31,285,426-31,285,680 | - | C1H3g05018 | C2H3g05041 | LOC_Os03g58870 | Os03g0803200 | - | Detail |
| CX3g027844 | 3:31,289,848-31,291,571 | - | C1H3g17883 | C2H3g25525 | LOC_Os03g58890 | Os03g0803500 | - | Detail |
| CX3g029942 | 3:31,297,487-31,311,663 | - | C1H3g08097 | C2H3g20910 | LOC_Os03g58910 | Os03g0803800 | - | Detail |
| CX3g025337 | 3:31,320,709-31,323,222 | + | C1H3g13889 | C2H3g08052 | LOC_Os03g58930 | Os03g0804100 | - | Detail |
| CX3g027592 | 3:31,330,530-31,332,199 | + | C1H3g18947 | C2H3g30090 | LOC_Os03g58940 | Os03g0804200 | - | Detail |
| CX3g024943 | 3:31,335,229-31,340,121 | - | C1H3g08908 | C2H3g10876 | LOC_Os03g58960 | Os03g0804300 | - | Detail |
| CX3g027330 | 3:31,341,940-31,346,975 | + | C1H3g16246 | C2H3g27290 | LOC_Os03g58970 | Os03g0804400 | - | Detail |
| CX3g029362 | 3:31,348,735-31,349,403 | + | C1H3g26409 | C2H3g28657 | LOC_Os03g58980 | Os03g0804500 | OsGLP3-7 | Detail |
| CX3g025687 | 3:31,352,789-31,353,484 | + | C1H3g26409 | C2H3g28657 | LOC_Os03g59010 | Os03g0804700 | - | Detail |
| CX3g028935 | 3:31,354,529-31,359,385 | + | C1H3g07772 | C2H3g08677 | LOC_Os03g59020 | Os03g0804800 | - | Detail |
| CX3g027095 | 3:31,360,698-31,362,512 | - | C1H3g18006 | C2H3g02565 | LOC_Os03g59030 | Os03g0804900 | - | Detail |
| CX3g030857 | 3:31,365,599-31,371,968 | + | C1H3g15435 | C2H3g23943 | LOC_Os03g59040 | Os03g0805100 | - | Detail |