| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g05748 | 3:28,131,029-28,135,020 | - | C2H3g17794 | CX3g028410 | LOC_Os03g52180 | Os03g0732000 | OsIspH2 | Detail |
| C1H3g07434 | 3:28,157,029-28,166,582 | + | C2H3g20028 | CX3g027773 | LOC_Os03g52239 | Os03g0732100 | ROSES1 | Detail |
| C1H3g11344 | 3:28,175,978-28,177,371 | - | C2H3g11203 | CX3g025156 | LOC_Os03g52280 | Os03g0733000 | - | Detail |
| C1H3g21763 | 3:28,189,063-28,191,231 | - | C2H3g04619 | CX3g026785 | LOC_Os03g52310 | Os03g0733400 | - | Detail |
| C1H3g23506 | 3:28,195,123-28,198,970 | - | C2H3g09605 | CX3g025961 | LOC_Os03g52320 | Os03g0733600 | OsGIF1, MKB3 | Detail |
| C1H3g07461 | 3:28,215,087-28,218,718 | - | C2H3g27935 | CX3g025745 | LOC_Os03g52340 | Os03g0733800 | OsERO1, OsEro1 | Detail |
| C1H3g05494 | 3:28,219,060-28,219,769 | - | C2H3g27141 | CX3g025745 | LOC_Os03g52340 | Os03g0733800 | OsERO1, OsEro1 | Detail |
| C1H3g23554 | 3:28,225,622-28,225,986 | + | C2H3g09869 | CX3g030687 | LOC_Os03g52360 | Os03g0734000 | - | Detail |
| C1H3g05445 | 3:28,229,476-28,229,850 | + | C2H3g10253 | CX3g025126 | LOC_Os03g52370 | Os03g0734100 | - | Detail |
| C1H3g04075 | 3:28,230,785-28,231,164 | + | C2H3g03601 | CX3g030269 | LOC_Os03g52380 | Os03g0734200 | - | Detail |
| C1H3g13317 | 3:28,232,620-28,232,968 | + | C2H3g04628 | CX3g028713 | LOC_Os03g52390 | Os03g0734300 | - | Detail |
| C1H3g23948 | 3:28,240,405-28,245,081 | - | C2H3g18785 | CX3g025429 | LOC_Os03g52430 | Os03g0734700 | - | Detail |
| C1H3g00521 | 3:28,249,444-28,254,003 | - | C2H3g00406 | CX3g025463 | LOC_Os03g52450 | Os03g0734900 | - | Detail |
| C1H3g04061 | 3:28,254,438-28,259,246 | - | C2H3g22726 | CX3g028629 | LOC_Os03g52460 | Os03g0735000 | - | Detail |
| C1H3g26718 | 3:28,255,210-28,255,978 | + | - | - | - | Os03g0735025 | - | Detail |
| C1H3g23423 | 3:28,261,902-28,266,895 | + | C2H3g20865 | CX3g025816 | LOC_Os03g52470 | Os03g0735100 | - | Detail |
| C1H3g03226 | 3:28,265,312-28,265,786 | - | - | - | - | Os03g0735150 | - | Detail |
| C1H3g22763 | 3:28,267,614-28,269,101 | - | C2H3g09114 | CX3g028779 | LOC_Os03g52475 | Os03g0735200 | - | Detail |
| C1H3g28384 | 3:28,272,368-28,275,961 | - | C2H3g10977 | CX3g030925 | LOC_Os03g52490 | Os03g0735300 | - | Detail |
| C1H3g06992 | 3:28,280,737-28,281,234 | + | C2H3g04119 | CX3g030643 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029111 | 3:30,854,528-30,856,339 | + | C1H3g04338 | C2H3g04652 | LOC_Os03g58100 | Os03g0795200 | - | Detail |
| CX3g026410 | 3:30,859,648-30,861,051 | - | C1H3g19476 | C2H3g03262 | LOC_Os03g58110 | Os03g0795300 | - | Detail |
| CX3g026927 | 3:30,867,335-30,869,506 | + | C1H3g17508 | C2H3g24120 | LOC_Os03g58120 | Os03g0795400 | - | Detail |
| CX3g026673 | 3:30,872,446-30,875,287 | + | C1H3g15891 | C2H3g27733 | LOC_Os03g58130 | Os03g0795500 | - | Detail |
| CX3g029982 | 3:30,875,928-30,877,964 | - | C1H3g05639 | C2H3g00892 | LOC_Os03g58140 | Os03g0795600 | - | Detail |
| CX3g025433 | 3:30,880,335-30,882,312 | - | C1H3g16443 | C2H3g02014 | LOC_Os03g58150 | Os03g0795800 | - | Detail |
| CX3g029604 | 3:30,883,397-30,885,649 | + | C1H3g00668 | C2H3g19484 | LOC_Os03g58160 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |
| CX3g025208 | 3:30,893,123-30,893,638 | + | - | - | - | - | - | Detail |
| CX3g030752 | 3:30,893,887-30,895,464 | - | C1H3g16112 | - | - | Os03g0157000 | - | Detail |
| CX3g029140 | 3:30,898,060-30,899,786 | + | C1H3g06155 | C2H3g08936 | LOC_Os03g58170 | Os03g0744600 | - | Detail |
| CX3g025951 | 3:30,912,231-30,912,422 | - | - | - | - | - | - | Detail |
| CX3g029920 | 3:30,918,742-30,919,245 | - | C1H3g22799 | C2H3g19170 | LOC_Os03g58180 | Os03g0796301 | - | Detail |
| CX3g028585 | 3:30,920,046-30,921,363 | - | C1H3g12446 | C2H3g21611 | LOC_Os03g58190 | Os03g0796400 | - | Detail |
| CX3g026109 | 3:30,924,908-30,927,050 | - | C1H3g01827 | C2H3g18356 | LOC_Os03g58204 | Os03g0796501 | - | Detail |
| CX3g025705 | 3:30,937,822-30,938,154 | + | C1H3g26452 | C2H4g07739 | LOC_Os01g57250 | Os01g0780900 | qTGW1.2a | Detail |
| CX3g026507 | 3:30,939,965-30,942,360 | + | C1H3g31311 | C2H3g24067 | LOC_Os06g36530 | - | - | Detail |
| CX3g028055 | 3:30,946,538-30,946,741 | - | - | - | - | - | - | Detail |
| CX3g027699 | 3:30,957,417-30,958,858 | + | C1H3g10470 | C2H3g06838 | LOC_Os03g58230 | Os03g0796600 | OsDUF50605 | Detail |
| CX3g028335 | 3:30,965,730-30,966,529 | + | C1H3g02748 | C2H3g30326 | - | - | - | Detail |
| CX3g029778 | 3:30,967,817-30,968,014 | - | - | - | - | - | - | Detail |