| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24139 | 4:27,479,776-27,489,811 | + | C2H4g19928 | CX4g032286 | LOC_Os04g52940 | Os04g0620500 | - | Detail |
| C1H4g13879 | 4:27,490,059-27,490,588 | - | C2H4g26723 | CX4g031575 | LOC_Os04g52950 | Os04g0620600 | - | Detail |
| C1H4g14650 | 4:27,494,601-27,501,705 | + | C2H4g15421 | CX4g033766 | LOC_Os04g52960 | Os04g0620700 | OsNUC1-S | Detail |
| C1H4g19711 | 4:27,504,206-27,512,953 | + | C2H4g07456 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C1H4g00045 | 4:27,513,607-27,513,831 | + | C2H4g09472 | - | - | - | - | Detail |
| C1H4g13741 | 4:27,514,785-27,517,963 | + | C2H4g15342 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C1H4g10658 | 4:27,519,574-27,520,708 | + | C2H4g09962 | CX4g035632 | LOC_Os04g53040 | Os04g0621300 | - | Detail |
| C1H4g28793 | 4:27,557,899-27,565,445 | + | C2H4g19695 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g02884 | 4:27,565,833-27,568,284 | - | C2H4g04050 | CX4g035590 | LOC_Os04g53170 | Os04g0623100 | - | Detail |
| C1H4g09095 | 4:27,568,360-27,568,789 | - | C2H4g04050 | CX4g035590 | LOC_Os04g53070 | Os04g0622000 | - | Detail |
| C1H4g00692 | 4:27,574,950-27,580,478 | + | C2H4g26666 | CX4g034662 | LOC_Os04g53050 | Os04g0621700 | PiPR1 | Detail |
| C1H4g30712 | 4:27,581,737-27,584,695 | - | C2H4g04050 | CX4g035590 | LOC_Os04g53130 | Os04g0622800 | - | Detail |
| C1H4g12671 | 4:27,605,310-27,605,595 | - | - | - | - | Os04g0621650 | - | Detail |
| C1H4g26346 | 4:27,610,067-27,611,351 | + | C2H4g08898 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g15103 | 4:27,637,985-27,642,195 | + | C2H4g04467 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g31657 | 4:27,644,325-27,645,216 | - | C2H4g22065 | CX4g035590 | LOC_Os04g53170 | Os04g0623100 | - | Detail |
| C1H4g11379 | 4:27,657,426-27,658,157 | + | C2H4g25020 | CX4g034503 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C1H4g02998 | 4:27,660,764-27,664,703 | - | - | - | - | - | - | Detail |
| C1H4g08540 | 4:27,679,869-27,680,540 | + | C2H4g26666 | CX4g031650 | LOC_Os04g53120 | Os04g0622600 | Xa1 | Detail |
| C1H4g22346 | 4:27,682,912-27,683,653 | - | C2H4g26972 | CX4g035247 | LOC_Os04g53170 | Os04g0623100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006793 | 1:17,745,225-17,760,762 | + | C1H1g28687 | C2H1g06550 | LOC_Os01g34330 | Os01g0527400 | - | Detail |
| CX1g000241 | 1:17,762,454-17,767,421 | - | C1H1g03628 | C2H1g06422 | LOC_Os01g34350 | Os01g0527600 | SHL2, shl2, SHL2, sh2, OsRDR6 | Detail |
| CX1g004192 | 1:17,772,168-17,776,754 | - | C1H1g18093 | C2H1g29503 | LOC_Os01g34390 | Os01g0527700 | - | Detail |
| CX1g007113 | 1:17,779,493-17,790,799 | + | C1H1g30321 | C2H1g02847 | LOC_Os01g34430 | Os01g0528000 | - | Detail |
| CX1g005291 | 1:17,804,962-17,809,055 | + | C1H1g07483 | C2H1g18148 | LOC_Os01g34480 | Os01g0528800 | - | Detail |
| CX1g001971 | 1:17,815,311-17,816,138 | + | C1H1g28876 | C2H1g18703 | - | Os01g0882200 | - | Detail |
| CX1g005885 | 1:17,843,810-17,845,258 | + | C1H1g05853 | C2H1g19557 | LOC_Os01g34560 | Os01g0529800 | OsCUT1 | Detail |
| CX1g007129 | 1:17,860,972-17,863,666 | + | C1H1g30939 | C2H1g14328 | LOC_Os01g34610 | Os01g0530300 | - | Detail |
| CX1g002051 | 1:17,873,805-17,875,135 | + | C1H1g13045 | C2H1g14488 | LOC_Os01g34620 | Os01g0530400 | - | Detail |
| CX1g001298 | 1:17,876,258-17,876,467 | + | - | - | - | - | - | Detail |
| CX1g004370 | 1:17,878,597-17,879,775 | - | - | - | LOC_Os01g34630 | Os01g0530500 | - | Detail |
| CX1g000818 | 1:17,885,910-17,888,699 | - | C1H1g29511 | C2H1g28456 | LOC_Os01g34660 | Os01g0531000 | - | Detail |
| CX1g003349 | 1:17,895,148-17,899,020 | + | C1H1g12081 | C2H1g17879 | LOC_Os01g34700 | Os01g0531500 | - | Detail |
| CX1g005955 | 1:17,911,956-17,924,410 | - | C1H1g13242 | C2H1g21275 | LOC_Os01g34780 | Os01g0532200 | - | Detail |
| CX1g005264 | 1:17,940,822-17,941,583 | - | - | - | LOC_Os01g34790 | Os01g0532300 | - | Detail |
| CX1g006290 | 1:17,952,340-17,952,531 | + | - | - | - | - | - | Detail |
| CX1g001102 | 1:17,969,340-17,970,044 | - | C1H6g30798 | - | LOC_Os01g34860 | - | - | Detail |
| CX1g001883 | 1:17,984,405-17,991,041 | + | C1H1g30653 | C2H1g04710 | LOC_Os01g34870 | Os01g0532800 | - | Detail |
| CX1g006242 | 1:17,992,463-18,014,345 | - | C1H1g08964 | C2H1g21809 | LOC_Os01g34880 | Os01g0533000 | - | Detail |
| CX1g002715 | 1:18,018,494-18,020,523 | - | - | - | LOC_Os01g34910 | - | - | Detail |