| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g07457 | 4:26,697,397-26,699,943 | - | C2H4g24514 | CX4g032647 | LOC_Os04g51820 | Os04g0607500 | - | Detail |
| C1H4g09049 | 4:26,699,977-26,701,273 | + | - | - | LOC_Os04g57570 | Os04g0607566 | - | Detail |
| C1H4g03737 | 4:26,706,967-26,711,188 | - | C2H4g20946 | CX4g032647 | LOC_Os04g51830 | Os04g0607600 | HKT7, OsHKT7, OsHKT1;4 | Detail |
| C1H4g18775 | 4:26,721,115-26,727,250 | - | C2H4g25434 | CX4g036606 | LOC_Os04g51880 | Os04g0608100 | - | Detail |
| C1H4g12772 | 4:26,764,607-26,770,634 | + | C2H4g29904 | CX4g035281 | LOC_Os04g51900 | Os04g0608400 | - | Detail |
| C1H4g08259 | 4:26,771,092-26,776,958 | - | C2H4g09751 | CX4g034715 | LOC_Os04g51910 | Os04g0608500 | OsRpn2b | Detail |
| C1H4g09401 | 4:26,778,363-26,780,432 | - | C2H4g13061 | CX4g034786 | LOC_Os04g51920 | Os04g0608600 | - | Detail |
| C1H4g08184 | 4:26,786,584-26,791,005 | + | C2H4g04998 | CX4g035213 | LOC_Os04g51940 | Os04g0608800 | - | Detail |
| C1H4g21318 | 4:26,791,108-26,795,235 | - | C2H4g22085 | CX4g033381 | LOC_Os04g51950 | Os04g0608900 | OsDPK4 | Detail |
| C1H4g09678 | 4:26,796,880-26,800,043 | + | C2H4g09513 | CX4g033039 | LOC_Os04g51960 | Os04g0609100 | - | Detail |
| C1H4g11239 | 4:26,805,239-26,808,986 | - | C2H4g22846 | CX4g036027 | LOC_Os04g51970 | Os04g0609200 | - | Detail |
| C1H4g04504 | 4:26,812,603-26,814,463 | + | C2H4g10194 | CX4g036172 | LOC_Os04g51980 | Os04g0609300 | - | Detail |
| C1H4g23593 | 4:26,820,808-26,822,862 | + | C2H4g14068 | CX4g032055 | LOC_Os04g51990 | Os04g0609500 | - | Detail |
| C1H4g02872 | 4:26,826,604-26,830,102 | - | C2H4g14049 | CX4g033415 | LOC_Os04g52000 | Os04g0609600 | - | Detail |
| C1H4g17909 | 4:26,836,880-26,852,312 | - | C2H4g12333 | CX4g035873 | LOC_Os04g52020 | Os04g0609700 | - | Detail |
| C1H4g16882 | 4:26,853,141-26,858,341 | - | C2H4g29505 | CX4g033944 | LOC_Os04g52040 | Os04g0609900 | - | Detail |
| C1H4g30135 | 4:26,858,701-26,863,480 | - | C2H4g09466 | CX4g033944 | LOC_Os04g52050 | Os04g0610000 | - | Detail |
| C1H4g03039 | 4:26,864,492-26,869,481 | - | C2H4g24559 | CX4g036281 | LOC_Os04g52060 | Os04g0610100 | - | Detail |
| C1H4g26012 | 4:26,871,319-26,877,771 | + | C2H4g13843 | CX4g036281 | LOC_Os04g52074 | Os04g0610200 | - | Detail |
| C1H4g22248 | 4:26,888,385-26,892,033 | - | C2H4g06680 | CX4g031762 | LOC_Os04g52100 | Os04g0610500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006793 | 1:17,745,225-17,760,762 | + | C1H1g28687 | C2H1g06550 | LOC_Os01g34330 | Os01g0527400 | - | Detail |
| CX1g000241 | 1:17,762,454-17,767,421 | - | C1H1g03628 | C2H1g06422 | LOC_Os01g34350 | Os01g0527600 | SHL2, shl2, SHL2, sh2, OsRDR6 | Detail |
| CX1g004192 | 1:17,772,168-17,776,754 | - | C1H1g18093 | C2H1g29503 | LOC_Os01g34390 | Os01g0527700 | - | Detail |
| CX1g007113 | 1:17,779,493-17,790,799 | + | C1H1g30321 | C2H1g02847 | LOC_Os01g34430 | Os01g0528000 | - | Detail |
| CX1g005291 | 1:17,804,962-17,809,055 | + | C1H1g07483 | C2H1g18148 | LOC_Os01g34480 | Os01g0528800 | - | Detail |
| CX1g001971 | 1:17,815,311-17,816,138 | + | C1H1g28876 | C2H1g18703 | - | Os01g0882200 | - | Detail |
| CX1g005885 | 1:17,843,810-17,845,258 | + | C1H1g05853 | C2H1g19557 | LOC_Os01g34560 | Os01g0529800 | OsCUT1 | Detail |
| CX1g007129 | 1:17,860,972-17,863,666 | + | C1H1g30939 | C2H1g14328 | LOC_Os01g34610 | Os01g0530300 | - | Detail |
| CX1g002051 | 1:17,873,805-17,875,135 | + | C1H1g13045 | C2H1g14488 | LOC_Os01g34620 | Os01g0530400 | - | Detail |
| CX1g001298 | 1:17,876,258-17,876,467 | + | - | - | - | - | - | Detail |
| CX1g004370 | 1:17,878,597-17,879,775 | - | - | - | LOC_Os01g34630 | Os01g0530500 | - | Detail |
| CX1g000818 | 1:17,885,910-17,888,699 | - | C1H1g29511 | C2H1g28456 | LOC_Os01g34660 | Os01g0531000 | - | Detail |
| CX1g003349 | 1:17,895,148-17,899,020 | + | C1H1g12081 | C2H1g17879 | LOC_Os01g34700 | Os01g0531500 | - | Detail |
| CX1g005955 | 1:17,911,956-17,924,410 | - | C1H1g13242 | C2H1g21275 | LOC_Os01g34780 | Os01g0532200 | - | Detail |
| CX1g005264 | 1:17,940,822-17,941,583 | - | - | - | LOC_Os01g34790 | Os01g0532300 | - | Detail |
| CX1g006290 | 1:17,952,340-17,952,531 | + | - | - | - | - | - | Detail |
| CX1g001102 | 1:17,969,340-17,970,044 | - | C1H6g30798 | - | LOC_Os01g34860 | - | - | Detail |
| CX1g001883 | 1:17,984,405-17,991,041 | + | C1H1g30653 | C2H1g04710 | LOC_Os01g34870 | Os01g0532800 | - | Detail |
| CX1g006242 | 1:17,992,463-18,014,345 | - | C1H1g08964 | C2H1g21809 | LOC_Os01g34880 | Os01g0533000 | - | Detail |
| CX1g002715 | 1:18,018,494-18,020,523 | - | - | - | LOC_Os01g34910 | - | - | Detail |