| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g18624 | 3:3,170,502-3,171,484 | + | C2H3g13511 | CX10g008216 | LOC_Os10g27174 | Os10g0411700 | - | Detail |
| C1H3g05997 | 3:3,171,631-3,175,957 | - | C2H3g27991 | CX3g025455 | LOC_Os03g07110 | Os03g0167200 | OsIQM2 | Detail |
| C1H3g25407 | 3:3,178,910-3,182,806 | + | C2H3g02351 | CX3g027989 | LOC_Os03g07120 | Os03g0167400 | - | Detail |
| C1H3g07433 | 3:3,188,091-3,193,053 | + | C2H3g10661 | CX3g026239 | LOC_Os03g07130 | Os03g0167500 | OsRMR3, OsRMR1, RMR1 | Detail |
| C1H3g28690 | 3:3,195,520-3,198,425 | + | C2H3g14503 | CX3g025251 | LOC_Os03g07140 | Os03g0167600 | DPW | Detail |
| C1H3g18783 | 3:3,198,743-3,203,341 | - | C2H3g20508 | CX3g030776 | LOC_Os03g07150 | Os03g0167700 | OsPP2A-5 | Detail |
| C1H3g01595 | 3:3,205,232-3,210,120 | + | C2H3g28397 | CX3g026055 | LOC_Os03g07160 | Os03g0167800 | - | Detail |
| C1H3g17186 | 3:3,215,481-3,218,315 | + | C2H3g21676 | CX3g029636 | LOC_Os03g07170 | Os03g0168000 | - | Detail |
| C1H3g09927 | 3:3,218,887-3,220,221 | - | C2H3g13648 | CX3g029073 | LOC_Os03g07180 | Os03g0168100 | - | Detail |
| C1H3g29196 | 3:3,221,920-3,223,702 | + | C2H3g15532 | CX3g027260 | LOC_Os03g07190 | Os03g0168200 | - | Detail |
| C1H3g00563 | 3:3,224,170-3,225,761 | - | C2H3g27665 | CX3g028572 | LOC_Os03g07200 | Os03g0168300 | - | Detail |
| C1H3g28864 | 3:3,228,954-3,235,173 | + | C2H3g04176 | CX3g029392 | LOC_Os03g07220 | Os03g0168400 | FLO10 | Detail |
| C1H3g15091 | 3:3,235,444-3,237,125 | - | C2H3g16262 | CX3g030074 | LOC_Os03g07226 | Os03g0168500 | - | Detail |
| C1H3g30181 | 3:3,240,661-3,242,295 | - | C2H3g22195 | CX3g027344 | LOC_Os03g07234 | Os03g0168550 | - | Detail |
| C1H3g19869 | 3:3,244,499-3,246,430 | - | C2H3g27571 | CX3g025173 | LOC_Os03g07250 | Os03g0168600 | CYP704B2, OsCYP704B2 | Detail |
| C1H3g04648 | 3:3,247,542-3,249,149 | - | C2H3g09688 | CX3g027461 | LOC_Os03g07260 | Os03g0168700 | - | Detail |
| C1H3g06973 | 3:3,250,126-3,250,332 | + | C2H3g10633 | CX3g029686 | LOC_Os03g07290 | Os03g0168900 | OsGERLP | Detail |
| C1H3g26589 | 3:3,250,415-3,251,928 | + | C2H3g26226 | CX3g029686 | LOC_Os03g07290 | Os03g0168900 | OsGERLP | Detail |
| C1H3g22339 | 3:3,252,878-3,256,211 | + | C2H3g29541 | CX3g029329 | LOC_Os03g07300 | Os03g0169100 | - | Detail |
| C1H3g05071 | 3:3,256,819-3,260,065 | - | C2H3g19913 | CX3g026826 | LOC_Os03g07310 | Os03g0169000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006793 | 1:17,745,225-17,760,762 | + | C1H1g28687 | C2H1g06550 | LOC_Os01g34330 | Os01g0527400 | - | Detail |
| CX1g000241 | 1:17,762,454-17,767,421 | - | C1H1g03628 | C2H1g06422 | LOC_Os01g34350 | Os01g0527600 | SHL2, shl2, SHL2, sh2, OsRDR6 | Detail |
| CX1g004192 | 1:17,772,168-17,776,754 | - | C1H1g18093 | C2H1g29503 | LOC_Os01g34390 | Os01g0527700 | - | Detail |
| CX1g007113 | 1:17,779,493-17,790,799 | + | C1H1g30321 | C2H1g02847 | LOC_Os01g34430 | Os01g0528000 | - | Detail |
| CX1g005291 | 1:17,804,962-17,809,055 | + | C1H1g07483 | C2H1g18148 | LOC_Os01g34480 | Os01g0528800 | - | Detail |
| CX1g001971 | 1:17,815,311-17,816,138 | + | C1H1g28876 | C2H1g18703 | - | Os01g0882200 | - | Detail |
| CX1g005885 | 1:17,843,810-17,845,258 | + | C1H1g05853 | C2H1g19557 | LOC_Os01g34560 | Os01g0529800 | OsCUT1 | Detail |
| CX1g007129 | 1:17,860,972-17,863,666 | + | C1H1g30939 | C2H1g14328 | LOC_Os01g34610 | Os01g0530300 | - | Detail |
| CX1g002051 | 1:17,873,805-17,875,135 | + | C1H1g13045 | C2H1g14488 | LOC_Os01g34620 | Os01g0530400 | - | Detail |
| CX1g001298 | 1:17,876,258-17,876,467 | + | - | - | - | - | - | Detail |
| CX1g004370 | 1:17,878,597-17,879,775 | - | - | - | LOC_Os01g34630 | Os01g0530500 | - | Detail |
| CX1g000818 | 1:17,885,910-17,888,699 | - | C1H1g29511 | C2H1g28456 | LOC_Os01g34660 | Os01g0531000 | - | Detail |
| CX1g003349 | 1:17,895,148-17,899,020 | + | C1H1g12081 | C2H1g17879 | LOC_Os01g34700 | Os01g0531500 | - | Detail |
| CX1g005955 | 1:17,911,956-17,924,410 | - | C1H1g13242 | C2H1g21275 | LOC_Os01g34780 | Os01g0532200 | - | Detail |
| CX1g005264 | 1:17,940,822-17,941,583 | - | - | - | LOC_Os01g34790 | Os01g0532300 | - | Detail |
| CX1g006290 | 1:17,952,340-17,952,531 | + | - | - | - | - | - | Detail |
| CX1g001102 | 1:17,969,340-17,970,044 | - | C1H6g30798 | - | LOC_Os01g34860 | - | - | Detail |
| CX1g001883 | 1:17,984,405-17,991,041 | + | C1H1g30653 | C2H1g04710 | LOC_Os01g34870 | Os01g0532800 | - | Detail |
| CX1g006242 | 1:17,992,463-18,014,345 | - | C1H1g08964 | C2H1g21809 | LOC_Os01g34880 | Os01g0533000 | - | Detail |
| CX1g002715 | 1:18,018,494-18,020,523 | - | - | - | LOC_Os01g34910 | - | - | Detail |