| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27366 | 3:25,593,481-25,596,090 | + | C2H3g13044 | CX3g027834 | LOC_Os03g48010 | Os03g0684500 | - | Detail |
| C1H3g15233 | 3:25,596,794-25,598,680 | - | C2H3g22552 | CX3g025275 | LOC_Os03g48030 | Os03g0684700 | - | Detail |
| C1H3g05365 | 3:25,602,648-25,604,750 | + | C2H3g24042 | CX3g030044 | LOC_Os03g48040 | Os03g0685000 | OsFdC2, OsHDY1 | Detail |
| C1H3g13814 | 3:25,608,977-25,611,480 | + | C2H3g04933 | CX3g026303 | LOC_Os03g48050 | Os03g0685100 | - | Detail |
| C1H3g01967 | 3:25,628,711-25,631,971 | + | C2H3g27897 | CX3g027858 | LOC_Os03g48060 | Os03g0685300 | FLO19 | Detail |
| C1H3g16679 | 3:25,637,779-25,641,456 | - | C2H3g26335 | CX3g028901 | LOC_Os03g48080 | Os03g0685500 | - | Detail |
| C1H3g01229 | 3:25,641,900-25,645,954 | - | C2H3g24853 | CX3g029151 | LOC_Os03g48090 | Os03g0685600 | - | Detail |
| C1H3g02003 | 3:25,645,977-25,646,372 | - | C2H3g18835 | - | - | - | - | Detail |
| C1H3g30763 | 3:25,646,548-25,659,506 | + | C2H3g08146 | CX3g027759 | - | - | - | Detail |
| C1H3g16754 | 3:25,660,235-25,660,525 | + | - | - | LOC_Os03g48110 | Os03g0685900 | - | Detail |
| C1H3g31689 | 3:25,666,295-25,679,368 | - | C2H3g06193 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C1H3g17077 | 3:25,685,933-25,689,140 | + | C2H3g15650 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C1H3g31064 | 3:25,690,701-25,695,188 | + | C2H3g12008 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C1H3g04074 | 3:25,695,859-25,701,417 | - | C2H3g19404 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C1H3g27780 | 3:25,713,193-25,717,194 | - | C2H3g17935 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C1H3g31647 | 3:25,721,830-25,722,576 | - | C2H3g13078 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g02479 | 3:25,724,849-25,725,295 | - | C2H3g02466 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C1H3g12014 | 3:25,727,294-25,728,022 | - | C2H3g05793 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C1H3g12256 | 3:25,730,050-25,730,676 | - | C2H3g06136 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g24497 | 3:25,732,258-25,737,184 | + | C2H3g19874 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025233 | 3:29,250,359-29,250,556 | - | - | - | - | - | - | Detail |
| CX3g031235 | 3:29,258,507-29,259,949 | + | C1H3g18474 | C2H3g15309 | LOC_Os03g55070 | Os03g0757900 | - | Detail |
| CX3g024997 | 3:29,265,491-29,267,086 | - | C1H3g02197 | C2H3g28463 | LOC_Os03g55080 | Os03g0758000 | - | Detail |
| CX3g026009 | 3:29,268,143-29,268,469 | - | C1H3g02197 | C2H3g28463 | LOC_Os03g55080 | Os03g0758050 | - | Detail |
| CX3g028301 | 3:29,273,847-29,280,625 | - | C1H3g12323 | C2H3g07139 | LOC_Os03g55090 | Os03g0758100 | OsPho1 | Detail |
| CX3g028780 | 3:29,283,754-29,288,819 | + | C1H3g03734 | C2H3g19977 | LOC_Os03g55100 | Os03g0758300 | OsCNGC14 | Detail |
| CX3g029041 | 3:29,291,206-29,291,364 | - | - | C2H3g12332 | - | - | - | Detail |
| CX3g028495 | 3:29,299,632-29,299,790 | + | - | C2H3g12332 | - | - | - | Detail |
| CX3g025340 | 3:29,302,065-29,304,916 | + | C1H3g12190 | C2H3g18083 | LOC_Os03g55110 | Os03g0758400 | - | Detail |
| CX3g025542 | 3:29,307,191-29,307,828 | - | C1H3g12511 | C2H3g16234 | LOC_Os03g55120 | Os03g0758500 | - | Detail |
| CX3g030315 | 3:29,323,056-29,328,769 | + | C1H3g28552 | C2H3g10389 | LOC_Os03g55130 | Os03g0758551 | - | Detail |
| CX3g029765 | 3:29,329,905-29,333,521 | + | C1H3g29486 | C2H3g16550 | LOC_Os03g55140 | Os03g0758700 | - | Detail |
| CX3g027861 | 3:29,336,407-29,338,418 | + | C1H3g11985 | C2H3g15196 | LOC_Os03g55150 | Os03g0758800 | OseIF5A-2 | Detail |
| CX3g030192 | 3:29,339,372-29,341,601 | + | C1H3g25907 | C2H3g06066 | LOC_Os03g55164 | Os03g0758900 | - | Detail |
| CX3g030258 | 3:29,343,616-29,347,058 | + | C1H3g14505 | C2H3g20753 | LOC_Os03g55164 | Os03g0758950 | OsWRKY4 | Detail |
| CX3g028552 | 3:29,347,775-29,350,187 | - | C1H3g16488 | C2H3g12552 | LOC_Os03g55180 | Os03g0759000 | - | Detail |
| CX3g026932 | 3:29,357,456-29,359,384 | + | C1H3g23489 | C2H3g13001 | LOC_Os03g55200 | Os03g0759500 | OsORC5 | Detail |
| CX3g027531 | 3:29,360,954-29,363,473 | - | C1H3g05953 | C2H3g23238 | LOC_Os03g55210 | Os03g0759600 | - | Detail |
| CX3g030027 | 3:29,370,065-29,374,504 | + | C1H3g02617 | C2H3g21370 | LOC_Os03g55220 | Os03g0759700 | - | Detail |
| CX3g027892 | 3:29,381,354-29,384,699 | + | C1H3g22708 | C2H3g27540 | LOC_Os03g55240 | Os03g0760200 | Bel, CYP81A6 | Detail |