| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g01638 | 12:19,168,136-19,170,832 | + | C2H12g11112 | CX12g017446 | LOC_Os12g38560 | Os12g0573900 | - | Detail |
| C1H12g01733 | 12:19,185,194-19,188,492 | - | C2H12g14541 | CX12g018735 | LOC_Os12g38570 | Os12g0574000 | - | Detail |
| C1H12g11315 | 12:19,200,267-19,209,933 | + | C2H12g27516 | CX12g018184 | LOC_Os12g38590 | Os12g0574400 | - | Detail |
| C1H12g22967 | 12:19,210,943-19,213,015 | - | C2H12g29399 | CX12g016154 | LOC_Os12g38610 | Os12g0574700 | - | Detail |
| C1H12g27164 | 12:19,232,054-19,233,151 | - | C2H12g29632 | CX12g017251 | LOC_Os12g38620 | Os12g0574800 | - | Detail |
| C1H12g15350 | 12:19,233,737-19,238,689 | - | C2H12g21362 | CX12g018328 | LOC_Os12g38630 | Os12g0574900 | - | Detail |
| C1H12g09502 | 12:19,239,778-19,240,434 | - | C2H12g24789 | CX12g015885 | LOC_Os12g38640 | Os12g0575000 | - | Detail |
| C1H12g14366 | 12:19,241,010-19,241,175 | + | - | - | LOC_Os12g38650 | Os12g0575200 | - | Detail |
| C1H12g19934 | 12:19,245,063-19,245,371 | - | C2H12g10258 | CX12g017838 | LOC_Os12g38720 | Os12g0575300 | - | Detail |
| C1H12g12899 | 12:19,256,388-19,259,259 | - | C2H12g00857 | CX12g015511 | LOC_Os12g38730 | Os12g0576300 | - | Detail |
| C1H12g10259 | 12:19,262,646-19,271,551 | - | C2H12g17120 | CX12g016341 | LOC_Os12g38750 | Os12g0576600 | - | Detail |
| C1H12g21793 | 12:19,283,944-19,287,697 | - | C2H12g04894 | CX12g017028 | LOC_Os12g38760 | Os12g0576700 | - | Detail |
| C1H12g30700 | 12:19,289,763-19,292,909 | - | C2H12g26878 | CX12g016600 | LOC_Os12g38770 | Os12g0576750 | PAP1B, OsPAP1b, NPP2, OsNPP2 | Detail |
| C1H12g05519 | 12:19,294,226-19,300,697 | - | C2H12g26810 | CX12g017595 | LOC_Os12g38780 | Os12g0576900 | - | Detail |
| C1H12g22000 | 12:19,303,109-19,305,330 | + | C2H12g06238 | CX12g017201 | LOC_Os12g38790 | Os12g0577000 | - | Detail |
| C1H12g15638 | 12:19,306,400-19,314,241 | + | C2H12g22098 | CX12g016939 | LOC_Os12g38800 | Os12g0577100 | - | Detail |
| C1H12g30406 | 12:19,320,157-19,321,197 | + | C2H12g08874 | CX12g017608 | LOC_Os12g38810 | Os12g0577200 | - | Detail |
| C1H12g21439 | 12:19,341,758-19,346,886 | + | C2H12g22738 | CX12g015208 | LOC_Os12g38850 | Os12g0577600 | - | Detail |
| C1H12g00519 | 12:19,348,331-19,350,779 | - | C2H12g29158 | CX12g018076 | LOC_Os12g38860 | Os12g0577700 | - | Detail |
| C1H12g23780 | 12:19,350,096-19,354,822 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025233 | 3:29,250,359-29,250,556 | - | - | - | - | - | - | Detail |
| CX3g031235 | 3:29,258,507-29,259,949 | + | C1H3g18474 | C2H3g15309 | LOC_Os03g55070 | Os03g0757900 | - | Detail |
| CX3g024997 | 3:29,265,491-29,267,086 | - | C1H3g02197 | C2H3g28463 | LOC_Os03g55080 | Os03g0758000 | - | Detail |
| CX3g026009 | 3:29,268,143-29,268,469 | - | C1H3g02197 | C2H3g28463 | LOC_Os03g55080 | Os03g0758050 | - | Detail |
| CX3g028301 | 3:29,273,847-29,280,625 | - | C1H3g12323 | C2H3g07139 | LOC_Os03g55090 | Os03g0758100 | OsPho1 | Detail |
| CX3g028780 | 3:29,283,754-29,288,819 | + | C1H3g03734 | C2H3g19977 | LOC_Os03g55100 | Os03g0758300 | OsCNGC14 | Detail |
| CX3g029041 | 3:29,291,206-29,291,364 | - | - | C2H3g12332 | - | - | - | Detail |
| CX3g028495 | 3:29,299,632-29,299,790 | + | - | C2H3g12332 | - | - | - | Detail |
| CX3g025340 | 3:29,302,065-29,304,916 | + | C1H3g12190 | C2H3g18083 | LOC_Os03g55110 | Os03g0758400 | - | Detail |
| CX3g025542 | 3:29,307,191-29,307,828 | - | C1H3g12511 | C2H3g16234 | LOC_Os03g55120 | Os03g0758500 | - | Detail |
| CX3g030315 | 3:29,323,056-29,328,769 | + | C1H3g28552 | C2H3g10389 | LOC_Os03g55130 | Os03g0758551 | - | Detail |
| CX3g029765 | 3:29,329,905-29,333,521 | + | C1H3g29486 | C2H3g16550 | LOC_Os03g55140 | Os03g0758700 | - | Detail |
| CX3g027861 | 3:29,336,407-29,338,418 | + | C1H3g11985 | C2H3g15196 | LOC_Os03g55150 | Os03g0758800 | OseIF5A-2 | Detail |
| CX3g030192 | 3:29,339,372-29,341,601 | + | C1H3g25907 | C2H3g06066 | LOC_Os03g55164 | Os03g0758900 | - | Detail |
| CX3g030258 | 3:29,343,616-29,347,058 | + | C1H3g14505 | C2H3g20753 | LOC_Os03g55164 | Os03g0758950 | OsWRKY4 | Detail |
| CX3g028552 | 3:29,347,775-29,350,187 | - | C1H3g16488 | C2H3g12552 | LOC_Os03g55180 | Os03g0759000 | - | Detail |
| CX3g026932 | 3:29,357,456-29,359,384 | + | C1H3g23489 | C2H3g13001 | LOC_Os03g55200 | Os03g0759500 | OsORC5 | Detail |
| CX3g027531 | 3:29,360,954-29,363,473 | - | C1H3g05953 | C2H3g23238 | LOC_Os03g55210 | Os03g0759600 | - | Detail |
| CX3g030027 | 3:29,370,065-29,374,504 | + | C1H3g02617 | C2H3g21370 | LOC_Os03g55220 | Os03g0759700 | - | Detail |
| CX3g027892 | 3:29,381,354-29,384,699 | + | C1H3g22708 | C2H3g27540 | LOC_Os03g55240 | Os03g0760200 | Bel, CYP81A6 | Detail |