| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00803 | 1:27,754,525-27,758,865 | + | C2H1g05014 | CX1g003460 | LOC_Os01g54030 | Os01g0743500 | OscytME3 | Detail |
| C1H1g06840 | 1:27,759,966-27,764,074 | - | C2H1g00803 | CX1g004169 | LOC_Os01g54040 | Os01g0743600 | - | Detail |
| C1H1g16391 | 1:27,766,186-27,772,511 | + | C2H1g15454 | CX1g001390 | LOC_Os01g54050 | Os01g0743800 | - | Detail |
| C1H1g28688 | 1:27,776,189-27,783,688 | + | C2H1g21661 | CX1g003627 | LOC_Os01g54080 | Os01g0744000 | - | Detail |
| C1H1g31382 | 1:27,784,765-27,786,432 | + | C2H1g24378 | CX1g006644 | LOC_Os01g54090 | Os01g0744200 | - | Detail |
| C1H1g10444 | 1:27,787,698-27,792,636 | - | C2H1g18426 | CX1g000737 | LOC_Os01g54100 | Os01g0744300 | - | Detail |
| C1H1g12791 | 1:27,797,236-27,801,637 | + | C2H1g05632 | CX1g000340 | LOC_Os01g45620 | Os01g0643800 | - | Detail |
| C1H1g08595 | 1:27,804,228-27,811,205 | - | C2H1g18422 | CX1g000671 | LOC_Os01g54119 | Os01g0744400 | - | Detail |
| C1H1g04241 | 1:27,820,400-27,821,227 | - | C2H1g03794 | CX1g001906 | LOC_Os01g54170 | Os01g0745000 | - | Detail |
| C1H1g05013 | 1:27,829,612-27,831,281 | - | C2H1g26869 | CX1g000917 | LOC_Os01g54210 | Os01g0745700 | - | Detail |
| C1H1g04265 | 1:27,835,022-27,835,541 | - | C2H1g26719 | - | - | - | - | Detail |
| C1H1g30379 | 1:27,841,198-27,849,208 | + | C2H1g01198 | CX1g002726 | LOC_Os01g54240 | Os01g0746200 | - | Detail |
| C1H1g26513 | 1:27,850,970-27,854,053 | - | C2H1g10075 | CX1g003512 | LOC_Os01g54270 | Os01g0746400 | D10, OsCCD8b | Detail |
| C1H1g04927 | 1:27,872,238-27,874,724 | - | C2H1g08944 | CX1g001601 | LOC_Os01g54300 | Os01g0746700 | - | Detail |
| C1H1g05817 | 1:27,893,341-27,895,478 | + | C2H1g16072 | CX1g000931 | LOC_Os01g54340 | Os01g0747300 | OsDUF50601 | Detail |
| C1H1g29529 | 1:27,896,046-27,900,252 | - | C2H1g03253 | CX1g000909 | LOC_Os01g54350 | Os01g0747400 | - | Detail |
| C1H1g03442 | 1:27,906,756-27,907,010 | + | C2H1g29509 | CX1g001041 | LOC_Os01g54370 | Os01g0747500 | - | Detail |
| C1H1g29128 | 1:27,907,153-27,909,218 | + | C2H1g12337 | CX1g001041 | LOC_Os01g54370 | Os01g0747500 | - | Detail |
| C1H1g26168 | 1:27,911,248-27,914,282 | + | C2H1g09835 | - | LOC_Os01g54390 | Os01g0747700 | - | Detail |
| C1H1g06355 | 1:27,932,531-27,937,039 | - | C2H1g00231 | CX1g000918 | LOC_Os01g54420 | Os01g0748000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g031002 | 3:29,089,446-29,095,556 | - | C1H3g02242 | C2H3g26951 | LOC_Os03g54170 | Os03g0753100 | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2 | Detail |
| CX3g030268 | 3:29,105,338-29,106,717 | - | C1H3g31832 | C2H3g17415 | LOC_Os03g54190 | Os03g0753500 | - | Detail |
| CX3g026043 | 3:29,112,421-29,113,551 | + | C1H3g27471 | C2H3g04287 | - | - | - | Detail |
| CX3g027702 | 3:29,115,431-29,118,414 | - | C1H3g27092 | C2H3g04194 | LOC_Os03g54750 | Os03g0754500 | - | Detail |
| CX3g025245 | 3:29,119,820-29,119,981 | - | - | - | - | - | - | Detail |
| CX3g030330 | 3:29,122,434-29,125,176 | + | C1H3g31483 | C2H3g28760 | LOC_Os03g54760 | Os03g0754800 | - | Detail |
| CX3g025057 | 3:29,126,821-29,127,459 | - | - | - | - | - | - | Detail |
| CX3g030692 | 3:29,127,979-29,132,969 | + | C1H3g01206 | C2H3g21643 | LOC_Os03g54770 | Os03g0754900 | - | Detail |
| CX3g030684 | 3:29,133,597-29,142,065 | + | C1H3g11086 | C2H3g21643 | LOC_Os03g54780 | Os03g0755000 | - | Detail |
| CX3g030008 | 3:29,143,611-29,148,496 | + | C1H3g02500 | C2H3g18088 | LOC_Os03g54790 | Os03g0755900 | - | Detail |
| CX3g026242 | 3:29,152,056-29,154,456 | + | C1H3g16167 | C2H3g29659 | LOC_Os03g54870 | Os03g0755600 | - | Detail |
| CX3g029420 | 3:29,172,457-29,175,603 | - | C1H3g18285 | C2H3g18957 | LOC_Os03g54900 | Os03g0756200 | - | Detail |
| CX3g031296 | 3:29,180,248-29,182,214 | - | C1H3g24157 | C2H3g16088 | LOC_Os03g54910 | Os03g0756300 | - | Detail |
| CX3g026830 | 3:29,184,606-29,187,485 | - | C1H3g08569 | C2H3g07304 | LOC_Os03g54920 | Os03g0756400 | - | Detail |
| CX3g027104 | 3:29,188,900-29,195,232 | - | C1H3g25183 | C2H3g22264 | LOC_Os03g54930 | Os03g0756500 | - | Detail |
| CX3g026117 | 3:29,199,483-29,199,662 | + | - | - | - | - | - | Detail |
| CX3g027732 | 3:29,200,388-29,205,275 | - | C1H3g07989 | C2H3g18479 | LOC_Os03g54970 | Os03g0756700 | - | Detail |
| CX3g030336 | 3:29,205,581-29,206,154 | + | C1H3g04866 | C2H3g11581 | LOC_Os03g54980 | Os03g0756800 | - | Detail |
| CX3g030173 | 3:29,244,636-29,244,905 | - | - | - | - | - | - | Detail |
| CX3g027817 | 3:29,246,658-29,247,068 | + | - | - | - | Os03g0757750 | - | Detail |