| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g17584 | 9:16,227,376-16,231,932 | - | C2H9g17089 | CX9g056383 | LOC_Os09g32840 | Os09g0506000 | - | Detail |
| C1H9g11480 | 9:16,232,588-16,233,674 | - | C2H9g19754 | CX9g056383 | LOC_Os09g32850 | Os09g0506000 | - | Detail |
| C1H9g02458 | 9:16,243,775-16,251,404 | + | C2H9g05876 | CX9g057776 | LOC_Os09g32930 | Os09g0506800 | PAIR2 | Detail |
| C1H9g22232 | 9:16,253,974-16,257,754 | + | C2H9g29007 | CX9g055013 | LOC_Os09g32940 | Os09g0506900 | - | Detail |
| C1H9g22572 | 9:16,278,858-16,283,611 | + | C2H9g16087 | CX9g055627 | LOC_Os09g32944 | Os09g0507100 | OsSPL18 | Detail |
| C1H9g01976 | 9:16,292,089-16,298,116 | + | C2H9g24094 | CX9g055656 | LOC_Os09g32948 | Os09g0507200 | OsMADS8, OsMADS8/24, DTE9 | Detail |
| C1H9g31066 | 9:16,300,450-16,302,607 | + | C2H9g09810 | CX9g056723 | LOC_Os09g32952 | Os09g0507300 | OsAAO5 | Detail |
| C1H9g29777 | 9:16,309,681-16,311,328 | + | C2H9g27580 | CX9g056857 | LOC_Os09g32960 | Os09g0507400 | - | Detail |
| C1H9g05594 | 9:16,312,804-16,315,162 | - | C2H9g28610 | CX9g058089 | LOC_Os09g32964 | Os09g0507500 | - | Detail |
| C1H9g16500 | 9:16,316,280-16,318,154 | - | C2H9g13596 | CX9g056931 | LOC_Os09g32968 | Os09g0507600 | - | Detail |
| C1H9g04875 | 9:16,319,832-16,321,966 | - | C2H9g15981 | CX9g056180 | LOC_Os09g32976 | Os09g0507800 | - | Detail |
| C1H9g11387 | 9:16,330,137-16,332,059 | - | C2H9g02236 | CX9g056378 | LOC_Os09g32988 | Os09g0508200 | - | Detail |
| C1H9g14135 | 9:16,332,984-16,337,749 | - | C2H9g17381 | CX9g057787 | LOC_Os08g42350 | Os09g0508250 | - | Detail |
| C1H9g15525 | 9:16,338,424-16,342,156 | - | C2H9g06782 | CX9g057936 | LOC_Os09g33450 | Os09g0508300 | - | Detail |
| C1H9g13578 | 9:16,342,199-16,342,928 | - | C2H9g02430 | - | - | - | - | Detail |
| C1H9g29300 | 9:16,346,052-16,347,908 | + | C2H9g16760 | CX9g056507 | LOC_Os09g33460 | Os09g0508500 | - | Detail |
| C1H9g31398 | 9:16,362,768-16,364,213 | - | C2H9g18629 | CX9g056683 | LOC_Os09g30980 | Os09g0482900 | - | Detail |
| C1H9g16740 | 9:16,364,627-16,372,015 | - | C2H9g21730 | CX9g057080 | LOC_Os09g33470 | Os09g0508900 | - | Detail |
| C1H9g22826 | 9:16,373,717-16,377,102 | - | C2H9g21730 | CX9g057446 | LOC_Os09g33480 | Os09g0509000 | OsMORF8-2 | Detail |
| C1H9g05421 | 9:16,385,809-16,387,167 | + | C2H9g10967 | CX9g057327 | LOC_Os09g33490 | Os09g0509100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g031238 | 3:28,936,126-28,945,159 | - | C1H3g11162 | C2H3g22149 | LOC_Os03g53880 | Os03g0749800 | - | Detail |
| CX3g030383 | 3:28,945,839-28,947,267 | + | C1H3g23610 | C2H3g15338 | LOC_Os03g53890 | Os03g0749900 | - | Detail |
| CX3g029891 | 3:28,947,903-28,948,729 | - | C1H3g03771 | C2H3g01456 | LOC_Os03g53900 | Os03g0750000 | - | Detail |
| CX3g029217 | 3:28,960,187-28,968,505 | + | C1H3g04679 | C2H3g18037 | LOC_Os03g53920 | Os03g0750300 | - | Detail |
| CX3g031096 | 3:28,970,248-28,970,850 | - | - | - | - | Os03g0750400 | - | Detail |
| CX3g026013 | 3:28,974,802-28,976,759 | - | C1H3g27629 | C2H3g28860 | LOC_Os03g53950 | Os03g0750700 | - | Detail |
| CX3g028825 | 3:28,982,410-28,987,828 | - | C1H3g16169 | C2H3g13208 | LOC_Os03g53960 | Os03g0750800 | - | Detail |
| CX3g025807 | 3:28,988,515-28,990,968 | - | C1H3g17674 | C2H3g05622 | LOC_Os03g53970 | Os03g0750900 | - | Detail |
| CX3g029898 | 3:28,993,565-28,994,348 | + | C1H3g30640 | C2H3g27227 | LOC_Os03g53980 | Os03g0751000 | - | Detail |
| CX3g026633 | 3:28,996,143-28,996,427 | - | C1H3g24232 | C2H3g03528 | LOC_Os03g61780 | Os03g0221500 | - | Detail |
| CX3g029143 | 3:28,998,235-29,002,856 | + | C1H3g23380 | C2H3g12979 | LOC_Os03g53990 | Os03g0751050 | - | Detail |
| CX3g026203 | 3:29,003,851-29,007,624 | - | C1H3g12600 | C2H3g03358 | LOC_Os03g54000 | Os03g0751100 | - | Detail |
| CX3g028609 | 3:29,014,744-29,019,964 | + | C1H3g12783 | C2H3g28171 | LOC_Os03g54040 | Os03g0751400 | - | Detail |
| CX3g027092 | 3:29,026,002-29,026,841 | + | C1H3g07489 | C2H3g04305 | LOC_Os03g54050 | Os03g0751600 | - | Detail |
| CX3g030127 | 3:29,036,484-29,040,950 | + | C1H3g19762 | C2H3g09716 | LOC_Os03g54084 | Os03g0752100 | PHYC | Detail |
| CX3g031059 | 3:29,041,753-29,045,743 | + | C1H3g25474 | C2H3g05209 | LOC_Os03g54091 | Os03g0752200 | OsSPO11-1, OsTOP6A1 | Detail |
| CX3g026511 | 3:29,047,083-29,048,212 | - | C1H3g21048 | C2H3g18265 | LOC_Os03g54100 | Os03g0752300 | TPKA, TPKa, OsTPKa | Detail |
| CX3g030726 | 3:29,052,640-29,053,509 | - | - | - | LOC_Os03g54114 | Os03g0349700 | - | Detail |
| CX3g025106 | 3:29,055,709-29,057,134 | + | C1H3g03067 | C2H3g06363 | LOC_Os03g54130 | Os03g0752500 | - | Detail |
| CX3g030009 | 3:29,059,037-29,062,364 | + | C1H3g23694 | C2H3g21077 | LOC_Os03g54150 | Os03g0752700 | - | Detail |