| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g25691 | 3:9,462,289-9,465,500 | + | C2H3g16033 | CX3g029358 | LOC_Os03g19020 | Os03g0302200 | OsHIRP1 | Detail |
| C1H3g01186 | 3:9,471,237-9,472,085 | + | C2H3g22160 | CX3g025355 | LOC_Os03g19040 | Os03g0302500 | - | Detail |
| C1H3g04602 | 3:9,474,864-9,477,250 | + | C2H3g04749 | CX3g031208 | LOC_Os03g19059 | Os03g0302700 | - | Detail |
| C1H3g22154 | 3:9,479,142-9,479,789 | + | C2H3g01569 | CX3g027498 | LOC_Os03g19070 | Os03g0302800 | - | Detail |
| C1H3g20481 | 3:9,493,622-9,498,114 | + | C2H3g02069 | CX3g029770 | LOC_Os03g19080 | Os03g0302900 | SSD1 | Detail |
| C1H3g20097 | 3:9,501,969-9,503,042 | + | C2H3g07365 | CX3g030525 | LOC_Os03g19090 | Os03g0303100 | - | Detail |
| C1H3g25874 | 3:9,511,342-9,517,834 | - | C2H3g09593 | CX3g027281 | LOC_Os03g19120 | Os03g0303500 | OsP1 | Detail |
| C1H3g30781 | 3:9,538,145-9,538,965 | - | C2H3g00606 | CX3g028949 | LOC_Os03g19170 | Os03g0304100 | - | Detail |
| C1H3g08647 | 3:9,542,012-9,549,190 | + | C2H3g12534 | CX3g027589 | LOC_Os03g19190 | Os03g0304400 | - | Detail |
| C1H3g21470 | 3:9,562,466-9,565,948 | - | C2H3g09070 | CX3g026232 | LOC_Os03g19200 | Os03g0304500 | - | Detail |
| C1H3g06043 | 3:9,588,138-9,590,992 | - | C2H3g20134 | - | LOC_Os03g19220 | Os03g0304800 | - | Detail |
| C1H3g10550 | 3:9,600,828-9,604,939 | - | C2H3g11777 | CX3g026365 | LOC_Os03g19240 | Os03g0305000 | - | Detail |
| C1H3g05747 | 3:9,607,422-9,611,029 | - | C2H3g17079 | CX3g028640 | LOC_Os03g19250 | Os03g0305100 | - | Detail |
| C1H3g00125 | 3:9,615,615-9,616,253 | - | C2H3g13465 | CX3g029782 | LOC_Os03g19260 | Os03g0305200 | - | Detail |
| C1H3g18796 | 3:9,624,177-9,625,049 | - | C2H3g28502 | CX3g028201 | LOC_Os03g19270 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g22639 | 3:9,627,619-9,632,059 | + | C2H3g12913 | CX3g030535 | LOC_Os03g19280 | Os03g0305500 | ASL1, OsASL1.2, OsASL1, OsAL1, red1 | Detail |
| C1H3g06291 | 3:9,633,050-9,634,190 | + | C2H3g24123 | CX3g026844 | LOC_Os03g19290 | Os03g0305600 | - | Detail |
| C1H3g09918 | 3:9,635,133-9,638,331 | + | C2H3g29234 | CX3g029447 | LOC_Os03g19300 | Os03g0305700 | - | Detail |
| C1H3g15276 | 3:9,638,602-9,640,053 | - | C2H3g25404 | CX3g025751 | LOC_Os03g19310 | Os03g0305800 | - | Detail |
| C1H3g04998 | 3:9,651,450-9,652,799 | + | C2H3g04492 | CX3g029664 | LOC_Os03g19330 | Os03g0306100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027349 | 3:28,525,303-28,526,963 | + | C1H3g23129 | C2H3g24679 | LOC_Os03g53060 | Os03g0741500 | - | Detail |
| CX3g026403 | 3:28,533,996-28,534,796 | + | - | - | LOC_Os03g53070 | Os03g0741600 | - | Detail |
| CX3g026540 | 3:28,537,261-28,537,518 | + | C1H3g27808 | C2H3g26390 | - | - | - | Detail |
| CX3g027921 | 3:28,537,742-28,538,083 | + | C1H3g11550 | C2H3g04912 | LOC_Os03g55810 | Os03g0204300 | - | Detail |
| CX3g028122 | 3:28,540,007-28,544,601 | - | C1H3g17107 | C2H3g15523 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| CX3g028919 | 3:28,550,812-28,551,060 | - | - | - | LOC_Os06g44630 | Os12g0157400 | - | Detail |
| CX3g025479 | 3:28,555,101-28,559,887 | - | C1H3g09898 | C2H3g18927 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| CX3g029167 | 3:28,568,128-28,568,882 | + | C1H3g03745 | C2H3g26757 | - | - | - | Detail |
| CX3g030577 | 3:28,569,707-28,572,937 | + | C1H3g23529 | C2H3g15149 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| CX3g026971 | 3:28,574,244-28,576,346 | - | C1H3g12201 | C2H3g27219 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| CX3g028042 | 3:28,580,467-28,581,342 | + | C1H3g27848 | C2H3g14191 | LOC_Os03g53160 | - | - | Detail |
| CX3g025009 | 3:28,597,659-28,599,125 | + | C1H3g30181 | C2H3g22195 | LOC_Os03g53170 | Os03g0743200 | - | Detail |
| CX3g027030 | 3:28,602,846-28,608,357 | + | C1H3g21003 | C2H3g10264 | LOC_Os03g53200 | Os03g0743400 | - | Detail |
| CX3g025033 | 3:28,611,011-28,618,800 | + | C1H3g26897 | C2H3g14439 | LOC_Os03g53220 | Os03g0743800 | - | Detail |
| CX3g030625 | 3:28,620,077-28,622,905 | - | C1H3g19995 | C2H3g10097 | LOC_Os03g53230 | Os03g0743900 | - | Detail |
| CX3g031133 | 3:28,625,095-28,625,310 | - | - | - | - | Os03g0752000 | - | Detail |
| CX3g030895 | 3:28,628,868-28,629,089 | - | - | - | - | - | - | Detail |
| CX3g029313 | 3:28,637,025-28,644,370 | - | C1H3g23789 | C2H3g30148 | LOC_Os03g53250 | Os03g0744300 | - | Detail |
| CX3g029967 | 3:28,645,723-28,648,335 | - | C1H3g21537 | C2H3g05022 | LOC_Os03g53270 | Os03g0744600 | - | Detail |
| CX3g030516 | 3:28,649,787-28,666,635 | - | C1H3g03638 | C2H3g19445 | LOC_Os03g53280 | Os03g0744650 | - | Detail |