| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g19488 | 1:2,298,724-2,303,225 | + | C1H1g16095 | - | LOC_Os01g05760 | Os01g0150400 | - | Detail |
| C2H1g06641 | 1:2,303,721-2,306,689 | + | C1H1g02086 | - | LOC_Os01g05720 | Os01g0150800 | - | Detail |
| C2H1g05176 | 1:2,314,723-2,323,063 | + | C1H1g24478 | - | LOC_Os01g05760 | Os01g0150800 | - | Detail |
| C2H1g16876 | 1:2,326,909-2,328,837 | + | C1H1g19514 | CX1g000733 | LOC_Os01g05790 | Os01g0151100 | - | Detail |
| C2H1g04685 | 1:2,330,571-2,333,799 | + | C1H1g31823 | CX1g006444 | LOC_Os01g05800 | Os01g0151200 | OsALB3 | Detail |
| C2H1g05574 | 1:2,336,859-2,341,665 | + | C1H1g06017 | CX1g002082 | LOC_Os01g05810 | Os01g0151400 | - | Detail |
| C2H1g26068 | 1:2,343,032-2,351,369 | + | C1H1g02351 | CX1g004686 | LOC_Os01g05820 | Os01g0151500 | - | Detail |
| C2H1g03197 | 1:2,352,421-2,356,890 | + | C1H1g31170 | CX1g003613 | LOC_Os01g05830 | Os01g0151600 | - | Detail |
| C2H1g12467 | 1:2,361,208-2,363,919 | + | C1H1g20436 | CX1g001726 | LOC_Os01g05840 | Os01g0151700 | - | Detail |
| C2H1g28796 | 1:2,367,051-2,368,863 | + | C1H1g08418 | CX1g000999 | LOC_Os01g05860 | Os01g0151900 | - | Detail |
| C2H1g14744 | 1:2,374,400-2,378,049 | + | C1H1g31653 | CX1g006643 | LOC_Os01g05870 | Os01g0152000 | - | Detail |
| C2H1g10532 | 1:2,378,629-2,379,867 | - | C1H1g04326 | - | LOC_Os01g05880 | Os01g0152100 | - | Detail |
| C2H1g27601 | 1:2,382,141-2,383,196 | - | C1H1g10379 | - | LOC_Os01g05880 | Os01g0152100 | - | Detail |
| C2H1g00255 | 1:2,385,004-2,385,465 | - | C1H1g09766 | CX1g005739 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| C2H1g19544 | 1:2,389,981-2,393,246 | + | C1H1g22469 | CX1g006643 | LOC_Os01g05940 | Os01g0152800 | - | Detail |
| C2H1g18813 | 1:2,395,155-2,395,616 | - | C1H1g27308 | CX1g005739 | LOC_Os01g05630 | Os01g0152700 | - | Detail |
| C2H1g02854 | 1:2,396,662-2,402,248 | - | C1H1g09766 | CX1g005739 | LOC_Os01g05630 | Os01g0152900 | - | Detail |
| C2H1g14033 | 1:2,397,100-2,400,408 | + | C1H1g24758 | CX1g006643 | LOC_Os01g05960 | Os01g0152800 | - | Detail |
| C2H1g09733 | 1:2,413,087-2,414,382 | - | C1H1g21562 | - | LOC_Os01g05880 | Os01g0152950 | - | Detail |
| C2H1g20272 | 1:2,417,121-2,418,369 | + | C1H1g01144 | CX1g006643 | LOC_Os01g05980 | Os01g0153000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025771 | 3:27,230,867-27,233,441 | + | C1H3g18557 | C2H3g23833 | LOC_Os03g50870 | Os03g0717900 | - | Detail |
| CX3g031328 | 3:27,234,165-27,237,569 | - | C1H3g24319 | C2H3g04275 | LOC_Os03g50880 | Os03g0718000 | OASB2 | Detail |
| CX3g028008 | 3:27,241,415-27,242,977 | + | C1H3g01613 | C2H3g25200 | LOC_Os03g50885 | Os03g0718100 | - | Detail |
| CX3g028246 | 3:27,244,684-27,247,041 | - | C1H3g29943 | C2H3g19768 | LOC_Os03g50900 | Os03g0718200 | - | Detail |
| CX3g026542 | 3:27,249,348-27,249,631 | - | - | - | - | Os03g0718300 | - | Detail |
| CX3g026893 | 3:27,259,776-27,260,489 | + | - | C2H3g06035 | LOC_Os03g50920 | Os03g0718500 | - | Detail |
| CX3g028458 | 3:27,269,784-27,272,484 | - | C1H3g23147 | C2H3g13023 | LOC_Os03g50940 | Os03g0718600 | OsCOX11 | Detail |
| CX3g025864 | 3:27,281,095-27,281,566 | + | C1H3g01568 | C2H3g21464 | LOC_Os03g50960 | Os03g0718800 | - | Detail |
| CX3g030965 | 3:27,285,693-27,289,759 | - | C1H3g22111 | C2H3g23829 | LOC_Os03g50970 | Os03g0719000 | - | Detail |
| CX3g028424 | 3:27,297,993-27,304,769 | + | C1H3g19794 | C2H3g02193 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| CX3g025374 | 3:27,307,581-27,314,926 | - | C1H3g27091 | C2H3g22670 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| CX3g028369 | 3:27,318,578-27,321,407 | - | C1H3g07073 | C2H3g02088 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| CX3g030509 | 3:27,327,245-27,333,278 | - | C1H3g18727 | C2H3g19826 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| CX3g025792 | 3:27,337,678-27,341,611 | - | C1H3g17828 | C2H3g21521 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| CX3g027542 | 3:27,348,568-27,350,818 | - | C1H3g02668 | C2H3g23219 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| CX3g029279 | 3:27,352,518-27,355,828 | - | C1H3g04945 | C2H3g09005 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| CX3g026564 | 3:27,358,636-27,359,148 | - | - | C2H10g15556 | LOC_Os03g49740 | - | - | Detail |
| CX3g026462 | 3:27,369,051-27,376,672 | + | C1H3g17570 | C2H3g13711 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| CX3g028983 | 3:27,430,408-27,431,828 | + | C1H3g27041 | C2H3g08962 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| CX3g027802 | 3:27,442,260-27,464,831 | + | C1H3g28337 | C2H3g28611 | LOC_Os03g51140 | Os03g0721200 | - | Detail |