| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g28698 | 9:1,487,240-1,496,362 | - | C1H9g29952 | CX9g056246 | LOC_Os09g03630 | Os09g0123500 | - | Detail |
| C2H9g19292 | 9:1,536,311-1,545,865 | - | C1H9g16072 | CX9g057791 | LOC_Os09g03680 | Os09g0124100 | - | Detail |
| C2H9g25534 | 9:1,560,865-1,562,022 | - | C1H9g23209 | - | - | - | - | Detail |
| C2H9g24306 | 9:1,565,222-1,568,002 | - | C1H9g23209 | - | - | - | - | Detail |
| C2H9g16378 | 9:1,569,834-1,579,280 | + | C1H9g12801 | CX9g056574 | LOC_Os09g03750 | Os09g0124800 | - | Detail |
| C2H9g09163 | 9:1,591,367-1,592,010 | - | C1H9g18385 | CX9g057875 | LOC_Os09g03780 | Os02g0135850 | - | Detail |
| C2H9g12670 | 9:1,606,662-1,607,297 | - | C1H9g04346 | CX9g057169 | LOC_Os09g03810 | Os09g0125400 | - | Detail |
| C2H9g17647 | 9:1,637,192-1,640,689 | + | C1H9g26448 | CX9g055235 | LOC_Os09g03890 | Os09g0125828 | TAPE | Detail |
| C2H9g28868 | 9:1,662,498-1,675,693 | - | C1H9g19601 | CX9g056929 | LOC_Os09g03939 | Os09g0125900 | - | Detail |
| C2H9g26990 | 9:1,716,065-1,716,805 | + | C1H9g10816 | CX9g056311 | LOC_Os09g03990 | Os09g0126600 | - | Detail |
| C2H9g15050 | 9:1,735,263-1,735,961 | + | C1H5g18816 | CX9g056105 | - | Os10g0408700 | - | Detail |
| C2H9g29380 | 9:1,736,488-1,737,407 | + | C1H9g06259 | CX9g055011 | - | - | - | Detail |
| C2H9g25301 | 9:1,740,826-1,742,474 | + | C1H9g22700 | - | - | - | - | Detail |
| C2H9g25521 | 9:1,746,832-1,750,373 | - | C1H9g15887 | CX9g054979 | LOC_Os09g04050 | Os09g0127300 | OsCCR17 | Detail |
| C2H9g06710 | 9:1,775,688-1,776,053 | - | - | CX9g057890 | LOC_Os09g04100 | Os09g0127700 | - | Detail |
| C2H9g09431 | 9:1,789,603-1,795,661 | - | C1H9g16571 | CX9g056004 | LOC_Os09g04110 | Os09g0127800 | - | Detail |
| C2H9g00209 | 9:1,823,495-1,829,332 | - | C1H9g16037 | CX9g057437 | LOC_Os09g04160 | Os09g0128400 | - | Detail |
| C2H9g03904 | 9:1,840,304-1,848,461 | - | C1H9g24985 | CX9g055087 | LOC_Os09g04210 | Os09g0128600 | - | Detail |
| C2H9g28638 | 9:1,856,095-1,857,048 | + | C1H9g09088 | CX9g056204 | LOC_Os09g04310 | Os09g0129500 | - | Detail |
| C2H9g26215 | 9:1,879,816-1,880,763 | - | C1H9g09088 | CX9g055776 | LOC_Os09g04339 | Os09g0129600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025771 | 3:27,230,867-27,233,441 | + | C1H3g18557 | C2H3g23833 | LOC_Os03g50870 | Os03g0717900 | - | Detail |
| CX3g031328 | 3:27,234,165-27,237,569 | - | C1H3g24319 | C2H3g04275 | LOC_Os03g50880 | Os03g0718000 | OASB2 | Detail |
| CX3g028008 | 3:27,241,415-27,242,977 | + | C1H3g01613 | C2H3g25200 | LOC_Os03g50885 | Os03g0718100 | - | Detail |
| CX3g028246 | 3:27,244,684-27,247,041 | - | C1H3g29943 | C2H3g19768 | LOC_Os03g50900 | Os03g0718200 | - | Detail |
| CX3g026542 | 3:27,249,348-27,249,631 | - | - | - | - | Os03g0718300 | - | Detail |
| CX3g026893 | 3:27,259,776-27,260,489 | + | - | C2H3g06035 | LOC_Os03g50920 | Os03g0718500 | - | Detail |
| CX3g028458 | 3:27,269,784-27,272,484 | - | C1H3g23147 | C2H3g13023 | LOC_Os03g50940 | Os03g0718600 | OsCOX11 | Detail |
| CX3g025864 | 3:27,281,095-27,281,566 | + | C1H3g01568 | C2H3g21464 | LOC_Os03g50960 | Os03g0718800 | - | Detail |
| CX3g030965 | 3:27,285,693-27,289,759 | - | C1H3g22111 | C2H3g23829 | LOC_Os03g50970 | Os03g0719000 | - | Detail |
| CX3g028424 | 3:27,297,993-27,304,769 | + | C1H3g19794 | C2H3g02193 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| CX3g025374 | 3:27,307,581-27,314,926 | - | C1H3g27091 | C2H3g22670 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| CX3g028369 | 3:27,318,578-27,321,407 | - | C1H3g07073 | C2H3g02088 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| CX3g030509 | 3:27,327,245-27,333,278 | - | C1H3g18727 | C2H3g19826 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| CX3g025792 | 3:27,337,678-27,341,611 | - | C1H3g17828 | C2H3g21521 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| CX3g027542 | 3:27,348,568-27,350,818 | - | C1H3g02668 | C2H3g23219 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| CX3g029279 | 3:27,352,518-27,355,828 | - | C1H3g04945 | C2H3g09005 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| CX3g026564 | 3:27,358,636-27,359,148 | - | - | C2H10g15556 | LOC_Os03g49740 | - | - | Detail |
| CX3g026462 | 3:27,369,051-27,376,672 | + | C1H3g17570 | C2H3g13711 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| CX3g028983 | 3:27,430,408-27,431,828 | + | C1H3g27041 | C2H3g08962 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| CX3g027802 | 3:27,442,260-27,464,831 | + | C1H3g28337 | C2H3g28611 | LOC_Os03g51140 | Os03g0721200 | - | Detail |