| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02661 | 4:16,013,372-16,019,034 | - | C2H4g01312 | CX4g031408 | LOC_Os04g31170 | Os04g0380800 | - | Detail |
| C1H4g01385 | 4:16,032,701-16,042,093 | - | C2H4g29753 | CX4g033271 | LOC_Os04g31190 | Os04g0381000 | - | Detail |
| C1H4g29700 | 4:16,048,099-16,053,840 | + | C2H4g17810 | CX4g035253 | LOC_Os04g31210 | Os04g0381100 | - | Detail |
| C1H4g17691 | 4:16,054,709-16,057,828 | + | C2H4g00277 | CX4g035237 | LOC_Os04g31240 | Os04g0381400 | - | Detail |
| C1H4g16213 | 4:16,060,070-16,060,468 | + | C2H4g17534 | CX4g031369 | LOC_Os04g31250 | Os04g0381500 | - | Detail |
| C1H4g09513 | 4:16,064,045-16,069,344 | + | C2H4g29102 | CX4g035133 | LOC_Os04g31270 | Os04g0381600 | - | Detail |
| C1H4g27606 | 4:16,082,106-16,084,132 | + | C2H4g16108 | CX4g034109 | LOC_Os04g31290 | Os04g0381700 | OsbHLH156 | Detail |
| C1H4g16826 | 4:16,092,463-16,094,028 | + | C2H4g25229 | CX4g032314 | LOC_Os04g31320 | Os04g0382100 | - | Detail |
| C1H4g06772 | 4:16,097,094-16,098,627 | - | - | - | - | Os04g0382250 | - | Detail |
| C1H4g24626 | 4:16,098,841-16,099,580 | - | - | - | - | - | - | Detail |
| C1H4g08250 | 4:16,102,777-16,107,833 | - | C2H4g08291 | CX4g033731 | LOC_Os04g31340 | Os04g0382300 | - | Detail |
| C1H4g23640 | 4:16,121,861-16,127,345 | + | C2H4g21907 | CX4g033213 | LOC_Os04g31390 | Os04g0382700 | - | Detail |
| C1H4g29507 | 4:16,133,426-16,136,822 | + | C2H4g11523 | CX4g031504 | LOC_Os04g31400 | Os04g0382800 | - | Detail |
| C1H4g27689 | 4:16,256,281-16,257,659 | - | C2H4g25485 | CX4g031500 | LOC_Os04g31610 | Os04g0385600 | - | Detail |
| C1H4g28157 | 4:16,321,603-16,322,148 | + | C2H4g09951 | CX4g036232 | LOC_Os04g31670 | Os04g0386300 | - | Detail |
| C1H4g01776 | 4:16,331,665-16,334,165 | + | C2H4g19704 | CX4g034133 | LOC_Os04g31690 | Os04g0386500 | - | Detail |
| C1H4g26815 | 4:16,334,895-16,339,950 | - | C2H4g09573 | CX4g031487 | LOC_Os04g31700 | Os04g0386600 | - | Detail |
| C1H4g21589 | 4:16,341,029-16,341,943 | + | C2H4g14766 | CX4g036353 | LOC_Os04g31710 | Os04g0386700 | - | Detail |
| C1H4g05500 | 4:16,344,502-16,345,259 | - | C2H4g24192 | CX4g032722 | LOC_Os04g31730 | Os04g0386900 | - | Detail |
| C1H4g13044 | 4:16,365,676-16,365,888 | + | C2H4g21209 | CX4g034462 | LOC_Os04g31804 | Os04g0387300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025771 | 3:27,230,867-27,233,441 | + | C1H3g18557 | C2H3g23833 | LOC_Os03g50870 | Os03g0717900 | - | Detail |
| CX3g031328 | 3:27,234,165-27,237,569 | - | C1H3g24319 | C2H3g04275 | LOC_Os03g50880 | Os03g0718000 | OASB2 | Detail |
| CX3g028008 | 3:27,241,415-27,242,977 | + | C1H3g01613 | C2H3g25200 | LOC_Os03g50885 | Os03g0718100 | - | Detail |
| CX3g028246 | 3:27,244,684-27,247,041 | - | C1H3g29943 | C2H3g19768 | LOC_Os03g50900 | Os03g0718200 | - | Detail |
| CX3g026542 | 3:27,249,348-27,249,631 | - | - | - | - | Os03g0718300 | - | Detail |
| CX3g026893 | 3:27,259,776-27,260,489 | + | - | C2H3g06035 | LOC_Os03g50920 | Os03g0718500 | - | Detail |
| CX3g028458 | 3:27,269,784-27,272,484 | - | C1H3g23147 | C2H3g13023 | LOC_Os03g50940 | Os03g0718600 | OsCOX11 | Detail |
| CX3g025864 | 3:27,281,095-27,281,566 | + | C1H3g01568 | C2H3g21464 | LOC_Os03g50960 | Os03g0718800 | - | Detail |
| CX3g030965 | 3:27,285,693-27,289,759 | - | C1H3g22111 | C2H3g23829 | LOC_Os03g50970 | Os03g0719000 | - | Detail |
| CX3g028424 | 3:27,297,993-27,304,769 | + | C1H3g19794 | C2H3g02193 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| CX3g025374 | 3:27,307,581-27,314,926 | - | C1H3g27091 | C2H3g22670 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| CX3g028369 | 3:27,318,578-27,321,407 | - | C1H3g07073 | C2H3g02088 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| CX3g030509 | 3:27,327,245-27,333,278 | - | C1H3g18727 | C2H3g19826 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| CX3g025792 | 3:27,337,678-27,341,611 | - | C1H3g17828 | C2H3g21521 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| CX3g027542 | 3:27,348,568-27,350,818 | - | C1H3g02668 | C2H3g23219 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| CX3g029279 | 3:27,352,518-27,355,828 | - | C1H3g04945 | C2H3g09005 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| CX3g026564 | 3:27,358,636-27,359,148 | - | - | C2H10g15556 | LOC_Os03g49740 | - | - | Detail |
| CX3g026462 | 3:27,369,051-27,376,672 | + | C1H3g17570 | C2H3g13711 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| CX3g028983 | 3:27,430,408-27,431,828 | + | C1H3g27041 | C2H3g08962 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| CX3g027802 | 3:27,442,260-27,464,831 | + | C1H3g28337 | C2H3g28611 | LOC_Os03g51140 | Os03g0721200 | - | Detail |