| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08402 | 3:2,768,021-2,772,193 | - | C2H3g18282 | CX3g030115 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g27159 | 3:2,772,594-2,774,096 | + | C2H3g21729 | CX3g028779 | LOC_Os03g13230 | Os03g0158900 | - | Detail |
| C1H3g28868 | 3:2,774,231-2,777,881 | - | C2H3g27396 | CX3g025128 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g19166 | 3:2,781,154-2,784,264 | + | C2H3g05214 | CX3g026196 | LOC_Os03g06330 | Os03g0159100 | - | Detail |
| C1H3g00562 | 3:2,785,161-2,791,188 | + | C2H3g05736 | CX3g029258 | LOC_Os03g06340 | Os03g0159200 | - | Detail |
| C1H3g03543 | 3:2,794,083-2,794,760 | - | C2H3g02146 | CX3g031270 | LOC_Os03g06350 | Os03g0159400 | - | Detail |
| C1H3g19003 | 3:2,799,427-2,800,430 | - | C2H3g07500 | CX3g027894 | LOC_Os03g06360 | Os03g0159600 | - | Detail |
| C1H3g22077 | 3:2,801,035-2,802,655 | + | C2H3g25960 | CX3g031117 | LOC_Os03g06370 | Os03g0159700 | OsNBL3 | Detail |
| C1H3g26257 | 3:2,806,639-2,807,112 | - | C2H3g24140 | CX3g025627 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| C1H3g14921 | 3:2,811,348-2,818,298 | + | C2H3g08821 | CX3g025658 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| C1H3g04551 | 3:2,818,804-2,821,602 | + | C2H3g02952 | - | - | - | - | Detail |
| C1H3g16143 | 3:2,822,745-2,823,038 | - | C2H3g01208 | CX3g027015 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| C1H3g24862 | 3:2,825,828-2,830,120 | - | C2H3g27894 | CX3g030159 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| C1H3g27076 | 3:2,839,115-2,842,159 | - | C2H3g10921 | CX3g027024 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| C1H3g12946 | 3:2,850,274-2,850,882 | - | C2H3g17145 | CX3g031001 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| C1H3g01001 | 3:2,860,192-2,860,646 | + | C2H3g18147 | - | LOC_Os03g06490 | Os03g0161000 | - | Detail |
| C1H3g27407 | 3:2,860,947-2,861,232 | + | C2H3g23882 | CX3g025715 | - | - | - | Detail |
| C1H3g20415 | 3:2,863,645-2,864,036 | + | C2H3g19291 | CX3g025715 | - | - | - | Detail |
| C1H3g11018 | 3:2,866,355-2,868,463 | + | C2H3g21331 | - | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C1H3g11682 | 3:2,868,966-2,877,261 | + | C2H3g05410 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025771 | 3:27,230,867-27,233,441 | + | C1H3g18557 | C2H3g23833 | LOC_Os03g50870 | Os03g0717900 | - | Detail |
| CX3g031328 | 3:27,234,165-27,237,569 | - | C1H3g24319 | C2H3g04275 | LOC_Os03g50880 | Os03g0718000 | OASB2 | Detail |
| CX3g028008 | 3:27,241,415-27,242,977 | + | C1H3g01613 | C2H3g25200 | LOC_Os03g50885 | Os03g0718100 | - | Detail |
| CX3g028246 | 3:27,244,684-27,247,041 | - | C1H3g29943 | C2H3g19768 | LOC_Os03g50900 | Os03g0718200 | - | Detail |
| CX3g026542 | 3:27,249,348-27,249,631 | - | - | - | - | Os03g0718300 | - | Detail |
| CX3g026893 | 3:27,259,776-27,260,489 | + | - | C2H3g06035 | LOC_Os03g50920 | Os03g0718500 | - | Detail |
| CX3g028458 | 3:27,269,784-27,272,484 | - | C1H3g23147 | C2H3g13023 | LOC_Os03g50940 | Os03g0718600 | OsCOX11 | Detail |
| CX3g025864 | 3:27,281,095-27,281,566 | + | C1H3g01568 | C2H3g21464 | LOC_Os03g50960 | Os03g0718800 | - | Detail |
| CX3g030965 | 3:27,285,693-27,289,759 | - | C1H3g22111 | C2H3g23829 | LOC_Os03g50970 | Os03g0719000 | - | Detail |
| CX3g028424 | 3:27,297,993-27,304,769 | + | C1H3g19794 | C2H3g02193 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| CX3g025374 | 3:27,307,581-27,314,926 | - | C1H3g27091 | C2H3g22670 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| CX3g028369 | 3:27,318,578-27,321,407 | - | C1H3g07073 | C2H3g02088 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| CX3g030509 | 3:27,327,245-27,333,278 | - | C1H3g18727 | C2H3g19826 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| CX3g025792 | 3:27,337,678-27,341,611 | - | C1H3g17828 | C2H3g21521 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| CX3g027542 | 3:27,348,568-27,350,818 | - | C1H3g02668 | C2H3g23219 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| CX3g029279 | 3:27,352,518-27,355,828 | - | C1H3g04945 | C2H3g09005 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| CX3g026564 | 3:27,358,636-27,359,148 | - | - | C2H10g15556 | LOC_Os03g49740 | - | - | Detail |
| CX3g026462 | 3:27,369,051-27,376,672 | + | C1H3g17570 | C2H3g13711 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| CX3g028983 | 3:27,430,408-27,431,828 | + | C1H3g27041 | C2H3g08962 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| CX3g027802 | 3:27,442,260-27,464,831 | + | C1H3g28337 | C2H3g28611 | LOC_Os03g51140 | Os03g0721200 | - | Detail |