| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H11g12795 | 11:18,099,904-18,101,426 | + | C2H2g29528 | CX11g013655 | LOC_Os06g38920 | Os05g0596300 | - | Detail |
| C1H11g03059 | 11:18,105,312-18,109,831 | + | C2H11g01368 | CX11g013362 | LOC_Os11g34360 | Os11g0546100 | - | Detail |
| C1H11g12310 | 11:18,111,183-18,112,492 | - | C2H11g09210 | CX11g012022 | LOC_Os11g34364 | Os11g0546200 | - | Detail |
| C1H11g15689 | 11:18,114,117-18,117,158 | - | C2H11g00851 | CX11g012292 | LOC_Os11g34370 | Os11g0546300 | - | Detail |
| C1H11g07026 | 11:18,139,351-18,140,883 | - | C2H11g21181 | CX11g014915 | LOC_Os11g34440 | Os11g0546600 | - | Detail |
| C1H11g24104 | 11:18,143,149-18,145,670 | + | C2H11g19139 | CX11g014814 | LOC_Os11g34450 | Os11g0546900 | OsGF14d | Detail |
| C1H11g13650 | 11:18,147,259-18,151,946 | - | C2H11g24153 | CX11g014860 | LOC_Os11g34460 | Os11g0547000 | - | Detail |
| C1H11g19158 | 11:18,160,081-18,160,879 | + | C2H11g28112 | CX11g014975 | LOC_Os11g34624 | Os11g0549300 | - | Detail |
| C1H11g11230 | 11:18,162,505-18,164,907 | - | C2H11g01030 | CX11g010885 | LOC_Os11g34680 | Os11g0549537 | - | Detail |
| C1H11g18583 | 11:18,169,116-18,170,101 | - | - | - | - | - | - | Detail |
| C1H11g18367 | 11:18,169,959-18,175,357 | + | C2H11g28394 | CX11g013742 | LOC_Os11g34690 | Os11g0549605 | - | Detail |
| C1H11g20490 | 11:18,176,564-18,181,472 | + | C2H11g26564 | CX11g011516 | LOC_Os11g34700 | Os11g0549610 | - | Detail |
| C1H11g06944 | 11:18,185,704-18,189,627 | - | C2H11g09780 | CX11g011099 | LOC_Os11g34710 | Os11g0549615 | - | Detail |
| C1H11g16426 | 11:18,189,934-18,191,819 | - | C2H11g11399 | CX11g011099 | LOC_Os11g34710 | Os11g0549615 | - | Detail |
| C1H11g02196 | 11:18,194,776-18,196,576 | - | C2H11g14890 | CX11g011099 | LOC_Os11g34720 | Os11g0549620 | - | Detail |
| C1H11g17827 | 11:18,198,641-18,199,220 | - | C2H11g14890 | CX11g011099 | LOC_Os11g34720 | Os11g0549620 | - | Detail |
| C1H11g24957 | 11:18,202,542-18,202,985 | + | - | - | - | - | - | Detail |
| C1H11g01588 | 11:18,205,092-18,206,370 | - | - | - | LOC_Os11g34730 | - | - | Detail |
| C1H11g01983 | 11:18,207,193-18,207,558 | - | - | - | LOC_Os11g34740 | - | - | Detail |
| C1H11g14919 | 11:18,210,698-18,219,671 | + | C2H11g29842 | CX11g012296 | LOC_Os11g34750 | Os11g0549635 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025771 | 3:27,230,867-27,233,441 | + | C1H3g18557 | C2H3g23833 | LOC_Os03g50870 | Os03g0717900 | - | Detail |
| CX3g031328 | 3:27,234,165-27,237,569 | - | C1H3g24319 | C2H3g04275 | LOC_Os03g50880 | Os03g0718000 | OASB2 | Detail |
| CX3g028008 | 3:27,241,415-27,242,977 | + | C1H3g01613 | C2H3g25200 | LOC_Os03g50885 | Os03g0718100 | - | Detail |
| CX3g028246 | 3:27,244,684-27,247,041 | - | C1H3g29943 | C2H3g19768 | LOC_Os03g50900 | Os03g0718200 | - | Detail |
| CX3g026542 | 3:27,249,348-27,249,631 | - | - | - | - | Os03g0718300 | - | Detail |
| CX3g026893 | 3:27,259,776-27,260,489 | + | - | C2H3g06035 | LOC_Os03g50920 | Os03g0718500 | - | Detail |
| CX3g028458 | 3:27,269,784-27,272,484 | - | C1H3g23147 | C2H3g13023 | LOC_Os03g50940 | Os03g0718600 | OsCOX11 | Detail |
| CX3g025864 | 3:27,281,095-27,281,566 | + | C1H3g01568 | C2H3g21464 | LOC_Os03g50960 | Os03g0718800 | - | Detail |
| CX3g030965 | 3:27,285,693-27,289,759 | - | C1H3g22111 | C2H3g23829 | LOC_Os03g50970 | Os03g0719000 | - | Detail |
| CX3g028424 | 3:27,297,993-27,304,769 | + | C1H3g19794 | C2H3g02193 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| CX3g025374 | 3:27,307,581-27,314,926 | - | C1H3g27091 | C2H3g22670 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| CX3g028369 | 3:27,318,578-27,321,407 | - | C1H3g07073 | C2H3g02088 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| CX3g030509 | 3:27,327,245-27,333,278 | - | C1H3g18727 | C2H3g19826 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| CX3g025792 | 3:27,337,678-27,341,611 | - | C1H3g17828 | C2H3g21521 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| CX3g027542 | 3:27,348,568-27,350,818 | - | C1H3g02668 | C2H3g23219 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| CX3g029279 | 3:27,352,518-27,355,828 | - | C1H3g04945 | C2H3g09005 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| CX3g026564 | 3:27,358,636-27,359,148 | - | - | C2H10g15556 | LOC_Os03g49740 | - | - | Detail |
| CX3g026462 | 3:27,369,051-27,376,672 | + | C1H3g17570 | C2H3g13711 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| CX3g028983 | 3:27,430,408-27,431,828 | + | C1H3g27041 | C2H3g08962 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| CX3g027802 | 3:27,442,260-27,464,831 | + | C1H3g28337 | C2H3g28611 | LOC_Os03g51140 | Os03g0721200 | - | Detail |