| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g03524 | 2:6,008,745-6,010,302 | - | - | CX2g024225 | - | Os02g0215950 | - | Detail |
| C1H2g31593 | 2:6,026,671-6,027,108 | - | - | CX2g020234 | LOC_Os02g12480 | Os02g0216300 | - | Detail |
| C1H2g06960 | 2:6,125,275-6,125,894 | - | - | CX2g019918 | - | - | - | Detail |
| C1H2g11667 | 2:6,148,857-6,150,859 | + | C2H2g02696 | CX2g023027 | LOC_Os02g12540 | Os02g0217400 | - | Detail |
| C1H2g21017 | 2:6,152,410-6,154,218 | + | C2H2g14429 | CX2g021453 | LOC_Os02g12550 | Os02g0217400 | - | Detail |
| C1H2g21079 | 2:6,157,615-6,161,219 | - | C2H2g24815 | CX2g024364 | - | Os02g0781600 | - | Detail |
| C1H2g30831 | 2:6,161,626-6,162,084 | - | C2H2g26935 | CX2g023330 | LOC_Os02g12560 | Os02g0216300 | - | Detail |
| C1H2g13963 | 2:6,163,673-6,167,508 | + | C2H2g29582 | CX2g021931 | LOC_Os02g12570 | Os02g0217500 | - | Detail |
| C1H2g08914 | 2:6,168,127-6,172,409 | - | C2H2g00474 | CX2g021895 | LOC_Os02g12580 | Os02g0217600 | OsPP2A-3 | Detail |
| C1H2g12784 | 2:6,175,434-6,180,432 | + | C2H2g14099 | CX2g020586 | LOC_Os02g12600 | Os02g0217800 | - | Detail |
| C1H2g08167 | 2:6,180,757-6,181,281 | - | C2H2g20685 | CX2g021986 | LOC_Os02g12610 | Os02g0217900 | - | Detail |
| C1H2g05762 | 2:6,185,492-6,192,843 | + | C2H2g24551 | CX2g023749 | LOC_Os02g12650 | Os02g0218200 | - | Detail |
| C1H2g24654 | 2:6,196,948-6,200,952 | - | C2H2g28852 | CX2g022045 | LOC_Os02g12660 | Os02g0218400 | - | Detail |
| C1H2g26993 | 2:6,203,250-6,203,612 | - | C2H2g15247 | - | - | Os02g0218550 | - | Detail |
| C1H2g21561 | 2:6,203,356-6,210,518 | + | C2H2g19601 | CX2g024682 | LOC_Os02g12670 | Os02g0218600 | - | Detail |
| C1H2g18950 | 2:6,215,532-6,217,034 | + | - | CX2g024749 | LOC_Os02g12680 | Os02g0218700 | HPL2, AOS3, OsHPL2, OsAOS3 | Detail |
| C1H2g20313 | 2:6,227,518-6,229,050 | + | C2H2g08598 | CX2g024585 | LOC_Os02g12690 | Os02g0218800 | AOS4, HPL1, OsAOS4, CYP74A4, OsHPL1 | Detail |
| C1H2g05355 | 2:6,233,935-6,235,344 | - | C2H2g01092 | CX2g022637 | LOC_Os02g12700 | Os02g0219000 | - | Detail |
| C1H2g22168 | 2:6,237,636-6,238,940 | - | C2H2g01092 | CX2g023095 | LOC_Os02g12710 | Os02g0219050 | - | Detail |
| C1H2g29918 | 2:6,250,808-6,253,653 | + | C2H2g28886 | CX2g023642 | LOC_Os04g51490 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025253 | 3:25,734,510-25,739,499 | + | C1H3g21570 | C2H3g05160 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| CX3g026283 | 3:25,740,077-25,740,760 | + | C1H3g31647 | C2H3g13078 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| CX3g031082 | 3:25,743,918-25,744,328 | + | - | - | LOC_Os03g48904 | - | - | Detail |
| CX3g026788 | 3:25,752,281-25,752,487 | + | - | - | - | - | - | Detail |
| CX3g027485 | 3:25,754,749-25,761,420 | + | C1H3g15303 | C2H3g19979 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| CX3g028236 | 3:25,772,096-25,782,541 | + | C1H3g15303 | C2H3g19979 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| CX3g027452 | 3:25,790,461-25,797,243 | + | C1H3g28879 | C2H3g24844 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| CX3g026383 | 3:25,799,012-25,802,764 | - | C1H3g09435 | C2H3g06110 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| CX3g027552 | 3:25,804,611-25,806,904 | + | C1H3g04287 | C2H3g14932 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| CX3g027293 | 3:25,826,206-25,826,373 | + | - | - | - | - | - | Detail |
| CX3g028461 | 3:25,834,284-25,834,632 | - | - | - | - | Os01g0709100 | - | Detail |
| CX3g030755 | 3:25,837,290-25,837,649 | - | - | - | - | - | - | Detail |
| CX3g030442 | 3:25,840,017-25,841,117 | + | C1H3g05611 | C2H3g05774 | LOC_Os03g48430 | Os03g0690500 | - | Detail |
| CX3g028707 | 3:25,852,255-25,853,862 | - | C1H3g28354 | C2H3g03020 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| CX3g027625 | 3:25,893,263-25,895,618 | - | C1H3g11606 | C2H3g25812 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| CX3g027541 | 3:25,902,368-25,905,901 | + | C1H3g28504 | C2H3g09671 | LOC_Os03g48490 | Os03g0691500 | - | Detail |
| CX3g028404 | 3:25,910,697-25,910,999 | + | C1H10g24741 | C2H1g05458 | - | - | - | Detail |
| CX3g025878 | 3:25,919,893-25,925,486 | + | C1H3g22244 | C2H3g25810 | LOC_Os03g48540 | Os03g0691800 | OsHIPL1 | Detail |
| CX3g028675 | 3:25,928,882-25,932,030 | + | C1H3g29365 | C2H3g04588 | LOC_Os03g48560 | Os03g0692000 | - | Detail |
| CX3g029610 | 3:25,938,572-25,938,943 | - | C1H3g22267 | C2H3g07015 | LOC_Os03g48570 | Os03g0692100 | - | Detail |