| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05995 | 3:23,353,840-23,360,112 | + | C1H3g08255 | CX3g025417 | LOC_Os03g44760 | Os03g0650400 | OsAM1 | Detail |
| C2H3g04123 | 3:23,365,568-23,368,654 | + | C1H3g04288 | CX3g029305 | LOC_Os03g44780 | Os03g0650700 | - | Detail |
| C2H3g25934 | 3:23,376,058-23,379,647 | + | C1H3g26002 | CX3g030102 | LOC_Os03g44800 | Os03g0650800 | - | Detail |
| C2H3g09215 | 3:23,380,760-23,383,326 | - | C1H3g15894 | CX3g025882 | LOC_Os03g44810 | Os03g0650900 | OsNLA2 | Detail |
| C2H3g18405 | 3:23,389,822-23,395,637 | + | C1H3g26796 | CX3g030028 | LOC_Os03g44820 | Os03g0651000 | - | Detail |
| C2H3g28118 | 3:23,392,076-23,399,652 | - | C1H3g28349 | CX3g026647 | LOC_Os03g44830 | Os03g0651100 | - | Detail |
| C2H3g18007 | 3:23,412,866-23,416,601 | - | C1H3g24505 | CX3g025530 | LOC_Os03g44840 | Os03g0651300 | - | Detail |
| C2H3g06423 | 3:23,419,178-23,419,672 | + | C1H3g26171 | - | - | - | - | Detail |
| C2H3g02024 | 3:23,425,394-23,426,265 | + | C1H3g24453 | CX3g026588 | LOC_Os03g44860 | - | - | Detail |
| C2H3g28657 | 3:23,436,378-23,436,686 | + | C1H3g26409 | CX3g025130 | LOC_Os03g44880 | Os03g0651800 | - | Detail |
| C2H3g03221 | 3:23,454,058-23,464,939 | + | C1H3g29368 | CX3g027235 | LOC_Os03g44900 | Os03g0652100 | - | Detail |
| C2H3g22550 | 3:23,466,563-23,467,393 | - | C1H3g01838 | CX3g031191 | - | - | - | Detail |
| C2H3g28037 | 3:23,481,141-23,481,464 | - | C1H3g10492 | CX3g027235 | LOC_Os03g44900 | Os03g0652600 | - | Detail |
| C2H3g20973 | 3:23,481,653-23,484,565 | - | C1H3g17818 | CX3g030705 | LOC_Os03g44950 | - | - | Detail |
| C2H3g17941 | 3:23,514,588-23,520,530 | - | C1H3g02859 | CX3g027629 | LOC_Os03g45120 | Os03g0653900 | - | Detail |
| C2H3g06696 | 3:23,550,319-23,556,097 | - | C1H3g07189 | CX3g027165 | LOC_Os03g45170 | Os03g0654400 | - | Detail |
| C2H3g22615 | 3:23,558,639-23,563,286 | - | C1H3g30470 | CX3g029174 | LOC_Os03g45180 | Os03g0654500 | - | Detail |
| C2H3g20364 | 3:23,564,019-23,565,466 | - | C1H3g08581 | CX3g031252 | LOC_Os03g45194 | Os03g0325500 | - | Detail |
| C2H3g01388 | 3:23,566,588-23,571,569 | - | C1H3g11388 | CX3g030732 | LOC_Os03g45194 | Os03g0654600 | NOL | Detail |
| C2H3g23313 | 3:23,573,325-23,581,245 | - | C1H3g03137 | CX3g025719 | LOC_Os09g01375 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029806 | 3:25,566,870-25,572,054 | - | C1H3g09827 | C2H3g10030 | LOC_Os03g47980 | Os03g0684100 | - | Detail |
| CX3g027899 | 3:25,573,178-25,575,925 | + | C1H3g13222 | C2H3g27014 | LOC_Os03g47990 | Os03g0684300 | - | Detail |
| CX3g029805 | 3:25,577,424-25,583,431 | + | C1H3g18256 | C2H3g26230 | LOC_Os03g48000 | Os03g0684400 | OsMGT3 | Detail |
| CX3g027834 | 3:25,586,631-25,589,240 | + | C1H3g27366 | C2H3g13044 | LOC_Os03g48010 | Os03g0684500 | - | Detail |
| CX3g025275 | 3:25,590,749-25,591,830 | - | C1H3g15233 | C2H3g22552 | LOC_Os03g48030 | Os03g0684700 | - | Detail |
| CX3g030044 | 3:25,595,798-25,597,900 | + | C1H3g05365 | C2H3g24042 | LOC_Os03g48040 | Os03g0685000 | OsFdC2, OsHDY1 | Detail |
| CX3g026303 | 3:25,601,089-25,603,917 | + | C1H3g13814 | C2H3g04933 | LOC_Os03g48050 | Os03g0685100 | - | Detail |
| CX3g030151 | 3:25,606,034-25,606,183 | - | - | - | - | - | - | Detail |
| CX3g027858 | 3:25,621,859-25,625,119 | + | C1H3g01967 | C2H3g27897 | LOC_Os03g48060 | Os03g0685300 | FLO19 | Detail |
| CX3g028901 | 3:25,631,177-25,634,604 | - | C1H3g16679 | C2H3g26335 | LOC_Os03g48080 | Os03g0685500 | - | Detail |
| CX3g029151 | 3:25,635,434-25,638,965 | - | C1H3g01229 | C2H3g24853 | LOC_Os03g48090 | Os03g0685600 | - | Detail |
| CX3g027759 | 3:25,639,821-25,652,299 | + | C1H3g30763 | C2H3g08146 | - | - | - | Detail |
| CX3g025545 | 3:25,659,908-25,670,180 | - | C1H3g31689 | C2H3g06193 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| CX3g025276 | 3:25,683,849-25,688,336 | + | C1H3g31064 | C2H3g12008 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| CX3g025668 | 3:25,689,338-25,694,473 | - | C1H3g04074 | C2H3g19404 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| CX3g029198 | 3:25,706,341-25,710,342 | - | C1H3g27780 | C2H3g17935 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| CX3g025750 | 3:25,713,158-25,713,901 | - | C1H3g26805 | C2H3g12687 | LOC_Os03g48200 | Os03g0687400 | - | Detail |
| CX3g029222 | 3:25,714,978-25,715,724 | - | C1H3g31647 | C2H3g13078 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| CX3g028579 | 3:25,720,442-25,721,170 | - | C1H3g12014 | C2H3g05793 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| CX3g029090 | 3:25,725,405-25,730,331 | + | C1H3g24497 | C2H3g19874 | LOC_Os03g48260 | Os03g0688200 | - | Detail |