| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11450 | 3:11,742,033-11,744,372 | - | C2H3g11362 | CX3g028620 | LOC_Os03g22600 | Os03g0347700 | WIN1 | Detail |
| C1H3g13278 | 3:11,750,819-11,753,460 | + | C2H3g23092 | CX3g029493 | LOC_Os03g22610 | Os03g0347800 | - | Detail |
| C1H3g09819 | 3:11,754,484-11,754,729 | - | C2H3g25992 | CX3g030811 | LOC_Os03g22620 | Os03g0347900 | - | Detail |
| C1H3g29577 | 3:11,762,650-11,762,820 | - | C2H3g27837 | - | - | - | - | Detail |
| C1H3g30714 | 3:11,779,139-11,781,386 | - | C2H3g00473 | CX3g028193 | LOC_Os03g22620 | Os03g0347900 | - | Detail |
| C1H3g20953 | 3:11,810,422-11,810,718 | - | C2H3g25992 | CX3g030811 | LOC_Os03g22620 | Os03g0347900 | - | Detail |
| C1H3g07660 | 3:11,818,158-11,820,954 | - | C2H3g19760 | CX3g028363 | LOC_Os03g22634 | Os03g0347900 | - | Detail |
| C1H3g29727 | 3:11,833,728-11,834,487 | - | C2H3g19760 | CX3g028091 | LOC_Os03g22634 | Os03g0348200 | - | Detail |
| C1H3g09351 | 3:11,835,651-11,836,625 | - | - | - | - | - | - | Detail |
| C1H3g00236 | 3:11,839,387-11,842,001 | - | C2H3g19760 | CX3g028193 | LOC_Os03g22634 | Os03g0348200 | - | Detail |
| C1H3g31631 | 3:11,848,768-11,852,149 | - | C2H3g12933 | CX3g028916 | LOC_Os03g22670 | Os03g0348800 | - | Detail |
| C1H3g20465 | 3:11,854,574-11,857,077 | - | C2H3g07266 | CX3g030623 | LOC_Os03g22680 | Os03g0348900 | OsSRFP1, SDEL2 | Detail |
| C1H3g09062 | 3:11,859,083-11,866,557 | - | C2H3g25184 | CX3g026958 | LOC_Os03g22690 | Os03g0349000 | - | Detail |
| C1H3g20024 | 3:11,868,357-11,872,876 | - | C2H3g06309 | CX3g031273 | LOC_Os03g22700 | Os03g0349200 | - | Detail |
| C1H3g13945 | 3:11,877,826-11,881,833 | - | C2H3g24778 | CX3g028742 | LOC_Os03g22730 | Os03g0350100 | - | Detail |
| C1H3g12425 | 3:11,887,278-11,891,178 | - | C2H3g11342 | CX3g025640 | LOC_Os03g22740 | Os03g0350300 | - | Detail |
| C1H3g17589 | 3:11,898,605-11,899,346 | + | C2H3g21910 | CX3g025310 | - | - | - | Detail |
| C1H3g30316 | 3:11,900,791-11,903,962 | + | C2H3g27063 | CX3g027240 | LOC_Os03g22770 | Os03g0351100 | - | Detail |
| C1H3g20290 | 3:11,904,720-11,905,952 | - | C2H3g12969 | CX3g031257 | LOC_Os03g22780 | Os03g0351200 | - | Detail |
| C1H3g29465 | 3:11,911,735-11,913,371 | + | C2H3g03023 | CX3g030954 | LOC_Os03g22790 | Os03g0351300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029806 | 3:25,566,870-25,572,054 | - | C1H3g09827 | C2H3g10030 | LOC_Os03g47980 | Os03g0684100 | - | Detail |
| CX3g027899 | 3:25,573,178-25,575,925 | + | C1H3g13222 | C2H3g27014 | LOC_Os03g47990 | Os03g0684300 | - | Detail |
| CX3g029805 | 3:25,577,424-25,583,431 | + | C1H3g18256 | C2H3g26230 | LOC_Os03g48000 | Os03g0684400 | OsMGT3 | Detail |
| CX3g027834 | 3:25,586,631-25,589,240 | + | C1H3g27366 | C2H3g13044 | LOC_Os03g48010 | Os03g0684500 | - | Detail |
| CX3g025275 | 3:25,590,749-25,591,830 | - | C1H3g15233 | C2H3g22552 | LOC_Os03g48030 | Os03g0684700 | - | Detail |
| CX3g030044 | 3:25,595,798-25,597,900 | + | C1H3g05365 | C2H3g24042 | LOC_Os03g48040 | Os03g0685000 | OsFdC2, OsHDY1 | Detail |
| CX3g026303 | 3:25,601,089-25,603,917 | + | C1H3g13814 | C2H3g04933 | LOC_Os03g48050 | Os03g0685100 | - | Detail |
| CX3g030151 | 3:25,606,034-25,606,183 | - | - | - | - | - | - | Detail |
| CX3g027858 | 3:25,621,859-25,625,119 | + | C1H3g01967 | C2H3g27897 | LOC_Os03g48060 | Os03g0685300 | FLO19 | Detail |
| CX3g028901 | 3:25,631,177-25,634,604 | - | C1H3g16679 | C2H3g26335 | LOC_Os03g48080 | Os03g0685500 | - | Detail |
| CX3g029151 | 3:25,635,434-25,638,965 | - | C1H3g01229 | C2H3g24853 | LOC_Os03g48090 | Os03g0685600 | - | Detail |
| CX3g027759 | 3:25,639,821-25,652,299 | + | C1H3g30763 | C2H3g08146 | - | - | - | Detail |
| CX3g025545 | 3:25,659,908-25,670,180 | - | C1H3g31689 | C2H3g06193 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| CX3g025276 | 3:25,683,849-25,688,336 | + | C1H3g31064 | C2H3g12008 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| CX3g025668 | 3:25,689,338-25,694,473 | - | C1H3g04074 | C2H3g19404 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| CX3g029198 | 3:25,706,341-25,710,342 | - | C1H3g27780 | C2H3g17935 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| CX3g025750 | 3:25,713,158-25,713,901 | - | C1H3g26805 | C2H3g12687 | LOC_Os03g48200 | Os03g0687400 | - | Detail |
| CX3g029222 | 3:25,714,978-25,715,724 | - | C1H3g31647 | C2H3g13078 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| CX3g028579 | 3:25,720,442-25,721,170 | - | C1H3g12014 | C2H3g05793 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| CX3g029090 | 3:25,725,405-25,730,331 | + | C1H3g24497 | C2H3g19874 | LOC_Os03g48260 | Os03g0688200 | - | Detail |