| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g10836 | 1:28,198,216-28,199,650 | - | C2H1g29811 | CX1g002430 | LOC_Os01g54960 | Os01g0753200 | - | Detail |
| C1H1g16292 | 1:28,200,764-28,202,409 | + | C2H1g20006 | CX1g006340 | LOC_Os01g54969 | Os01g0753300 | OsASMT1 | Detail |
| C1H1g07442 | 1:28,202,676-28,208,745 | - | C2H1g09497 | CX1g002732 | LOC_Os01g54990 | Os01g0753500 | OsARF3lb | Detail |
| C1H1g02806 | 1:28,221,205-28,222,136 | + | C2H1g17359 | CX1g006658 | LOC_Os01g55020 | Os01g0754000 | - | Detail |
| C1H1g16947 | 1:28,224,309-28,226,105 | - | C2H1g07609 | CX1g002933 | LOC_Os01g55030 | Os01g0754100 | - | Detail |
| C1H1g05578 | 1:28,227,601-28,236,955 | - | C2H1g07292 | CX1g005591 | LOC_Os01g55040 | Os01g0754200 | - | Detail |
| C1H1g11544 | 1:28,237,266-28,242,179 | - | C2H1g26542 | CX1g006946 | LOC_Os01g55050 | Os01g0754500 | - | Detail |
| C1H1g27304 | 1:28,273,856-28,282,338 | - | C2H1g25651 | CX1g006404 | LOC_Os01g55094 | Os01g0755100 | - | Detail |
| C1H1g29987 | 1:28,291,077-28,292,504 | + | C2H1g07282 | CX1g000336 | LOC_Os01g55100 | Os01g0755500 | OsPCF7, PCF7 | Detail |
| C1H1g10544 | 1:28,333,028-28,335,537 | - | C2H1g26286 | CX1g005575 | LOC_Os01g55120 | Os01g0756000 | - | Detail |
| C1H1g11346 | 1:28,340,031-28,341,059 | - | C2H1g10412 | - | LOC_Os01g55140 | Os01g0756101 | - | Detail |
| C1H1g21888 | 1:28,343,215-28,343,646 | + | C2H1g27103 | CX1g006243 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| C1H1g31515 | 1:28,344,380-28,345,306 | + | C2H1g14895 | CX1g006243 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| C1H1g02918 | 1:28,352,747-28,363,013 | - | C2H1g30168 | CX1g003911 | LOC_Os01g55170 | Os01g0756400 | - | Detail |
| C1H1g08295 | 1:28,368,293-28,372,229 | + | C2H1g05126 | CX1g003221 | LOC_Os01g55190 | Os01g0531400 | - | Detail |
| C1H1g21813 | 1:28,381,812-28,384,050 | + | C2H1g22597 | CX1g002081 | LOC_Os01g55200 | Os01g0756700 | KAT1, OsKAT1 | Detail |
| C1H1g15032 | 1:28,402,160-28,404,225 | + | C2H1g23299 | CX1g004140 | LOC_Os01g55240 | Os01g0757200 | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3 | Detail |
| C1H1g13228 | 1:28,418,667-28,422,542 | + | C2H1g18562 | CX1g001542 | LOC_Os01g55260 | Os01g0757400 | - | Detail |
| C1H1g20677 | 1:28,423,057-28,425,847 | - | C2H1g15915 | CX1g000631 | LOC_Os01g55270 | Os01g0757500 | - | Detail |
| C1H1g01435 | 1:28,432,212-28,434,104 | - | C2H1g24400 | CX1g004257 | LOC_Os01g55280 | Os01g0757600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029265 | 3:25,380,567-25,383,731 | - | C1H3g03715 | C2H3g11834 | LOC_Os03g47740 | Os03g0680800 | - | Detail |
| CX3g026637 | 3:25,392,771-25,392,923 | - | - | - | - | - | - | Detail |
| CX3g028531 | 3:25,409,003-25,430,648 | + | C1H3g12498 | C2H3g10722 | LOC_Os03g47760 | Os03g0681300 | - | Detail |
| CX3g025611 | 3:25,432,017-25,436,695 | - | C1H3g24402 | C2H3g08660 | LOC_Os03g47770 | Os03g0681400 | - | Detail |
| CX3g025413 | 3:25,439,843-25,443,230 | + | C1H3g21990 | C2H3g06154 | LOC_Os03g47780 | Os03g0681700 | OsWD40-81, OsLST8, LST8 | Detail |
| CX3g030716 | 3:25,444,956-25,450,270 | - | C1H3g03027 | C2H3g08631 | LOC_Os03g47790 | Os03g0681800 | - | Detail |
| CX3g027526 | 3:25,457,037-25,457,204 | - | - | - | - | - | - | Detail |
| CX3g027830 | 3:25,459,881-25,460,318 | - | - | - | - | - | - | Detail |
| CX3g030858 | 3:25,461,387-25,465,205 | - | C1H3g11959 | C2H3g29470 | LOC_Os03g47800 | Os03g0681900 | - | Detail |
| CX3g025153 | 3:25,466,414-25,469,145 | - | C1H3g05321 | C2H3g25886 | - | - | - | Detail |
| CX3g026883 | 3:25,472,292-25,474,298 | + | - | - | - | - | - | Detail |
| CX3g029458 | 3:25,481,897-25,489,886 | - | C1H3g19741 | C2H3g14407 | LOC_Os03g47820 | Os03g0682200 | - | Detail |
| CX3g025680 | 3:25,507,191-25,508,558 | - | - | C2H3g13971 | - | Os03g0682822 | - | Detail |
| CX3g030162 | 3:25,515,549-25,516,322 | - | C1H3g26805 | C2H3g28221 | LOC_Os03g47890 | Os03g0683200 | - | Detail |
| CX3g027958 | 3:25,520,286-25,521,610 | - | C1H3g30362 | C2H3g09855 | LOC_Os03g47896 | Os03g0683300 | - | Detail |
| CX3g030594 | 3:25,523,089-25,523,754 | + | C1H3g26805 | C2H3g12687 | LOC_Os03g47910 | Os03g0683500 | - | Detail |
| CX3g026415 | 3:25,527,525-25,539,251 | + | C1H3g30757 | C2H3g15375 | LOC_Os03g47930 | Os03g0138600 | - | Detail |
| CX3g030593 | 3:25,540,862-25,544,834 | + | C1H3g31733 | C2H3g26490 | LOC_Os03g47940 | Os03g0683800 | - | Detail |
| CX3g027411 | 3:25,547,315-25,558,859 | - | C1H3g20424 | C2H3g09499 | LOC_Os03g47949 | Os03g0683900 | - | Detail |
| CX3g028427 | 3:25,560,515-25,564,343 | - | C1H3g20424 | C2H3g09499 | LOC_Os03g47970 | Os03g0684000 | - | Detail |