| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g15340 | 5:1,779,981-1,784,195 | + | C1H5g15318 | CX5g039240 | LOC_Os05g04520 | Os05g0135800 | RLCK178, OsPti1a, OsRLCK178 | Detail |
| C2H5g09071 | 5:1,784,743-1,786,926 | - | C1H5g22825 | CX5g040556 | LOC_Os05g04530 | Os05g0135900 | - | Detail |
| C2H5g11738 | 5:1,798,378-1,799,442 | + | - | CX5g040743 | LOC_Os05g04540 | Os05g0136100 | - | Detail |
| C2H5g01548 | 5:1,800,699-1,804,493 | - | C1H5g10755 | CX5g039210 | LOC_Os05g04550 | Os05g0136200 | - | Detail |
| C2H5g23155 | 5:1,829,551-1,835,745 | + | C1H5g30580 | CX5g040521 | LOC_Os05g04584 | Os05g0136900 | OsPMT2, OsAT3 | Detail |
| C2H5g15489 | 5:1,843,721-1,844,729 | + | - | - | - | - | - | Detail |
| C2H5g06046 | 5:1,849,609-1,855,994 | + | C1H5g18480 | CX5g040420 | LOC_Os05g04610 | Os05g0137200 | - | Detail |
| C2H5g14079 | 5:1,857,180-1,858,849 | + | C1H5g19392 | CX5g039843 | LOC_Os05g04620 | Os05g0137300 | - | Detail |
| C2H5g14963 | 5:1,859,884-1,863,799 | + | C1H5g26357 | CX5g040603 | LOC_Os05g04630 | Os05g0137400 | - | Detail |
| C2H5g23559 | 5:1,864,493-1,869,943 | - | C1H5g12317 | CX5g036724 | LOC_Os05g04640 | Os05g0137500 | OsWRKY5 | Detail |
| C2H5g03222 | 5:1,881,639-1,882,913 | + | C1H5g04306 | CX5g037574 | LOC_Os05g04650 | Os05g0137600 | - | Detail |
| C2H5g28363 | 5:1,883,175-1,884,682 | - | C1H5g13155 | - | LOC_Os05g04660 | Os05g0137700 | - | Detail |
| C2H5g07352 | 5:1,899,671-1,900,263 | - | C1H5g04433 | CX1g002314 | LOC_Os05g04700 | Os05g0138300 | OsLti6b | Detail |
| C2H5g19962 | 5:1,916,898-1,919,055 | + | C1H5g25088 | CX5g037589 | LOC_Os05g04740 | Os05g0139100 | APG | Detail |
| C2H5g25266 | 5:1,922,063-1,923,286 | - | C1H5g25511 | CX5g037123 | LOC_Os05g04750 | Os05g0139200 | - | Detail |
| C2H5g23665 | 5:1,933,084-1,934,268 | - | C1H5g18751 | CX5g037123 | LOC_Os05g04770 | Os05g0139300 | - | Detail |
| C2H5g30393 | 5:1,934,410-1,935,053 | + | - | - | - | - | - | Detail |
| C2H5g03061 | 5:1,970,541-1,971,097 | - | C1H5g17291 | CX5g038058 | - | Os05g0140000 | - | Detail |
| C2H5g22528 | 5:1,971,471-1,974,178 | + | C1H5g01364 | CX5g041027 | LOC_Os05g04820 | Os05g0140100 | - | Detail |
| C2H5g28238 | 5:1,982,372-1,984,229 | + | C1H1g13588 | CX5g039047 | LOC_Os05g04830 | Os05g0140300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004589 | 1:16,839,672-16,839,896 | + | C1H3g13406 | - | - | - | - | Detail |
| CX1g005301 | 1:16,847,211-16,847,621 | - | - | - | - | Os01g0509750 | - | Detail |
| CX1g001437 | 1:16,850,593-16,853,628 | + | C1H1g15462 | C2H1g19341 | LOC_Os01g32640 | Os01g0509900 | - | Detail |
| CX1g001296 | 1:16,854,526-16,854,792 | + | - | - | - | - | - | Detail |
| CX1g000669 | 1:16,866,973-16,871,668 | + | C1H1g09530 | C2H1g03532 | LOC_Os01g32660 | Os01g0510100 | OsMKK6, OsMEK1 | Detail |
| CX1g006994 | 1:16,873,670-16,874,014 | - | - | - | LOC_Os01g32670 | Os01g0510200 | - | Detail |
| CX1g001061 | 1:16,883,310-16,896,998 | + | C1H1g03786 | C2H1g05772 | LOC_Os01g32710 | Os01g0510500 | - | Detail |
| CX1g004721 | 1:16,898,489-16,901,909 | - | C1H1g15241 | C2H1g08671 | LOC_Os01g32730 | Os01g0510600 | OsFLU1, OXP | Detail |
| CX1g000908 | 1:16,910,858-16,917,965 | - | C1H1g26631 | C2H1g26446 | LOC_Os01g32750 | Os01g0510800 | - | Detail |
| CX1g001274 | 1:16,919,188-16,919,724 | - | C1H1g18869 | C2H1g19008 | LOC_Os04g08170 | Os01g0759200 | OsCIPK30 | Detail |
| CX1g001608 | 1:16,925,929-16,926,843 | + | - | - | - | - | - | Detail |
| CX1g002333 | 1:16,964,303-16,966,674 | - | C1H1g16518 | C2H1g29547 | LOC_Os01g32780 | Os01g0511100 | OsUSP5 | Detail |
| CX1g000349 | 1:16,969,577-16,971,590 | - | C1H1g30895 | C2H1g25988 | LOC_Os01g32790 | Os01g0511200 | - | Detail |
| CX1g005541 | 1:16,973,592-16,976,641 | - | C1H1g00873 | C2H1g01415 | LOC_Os01g32800 | Os01g0511300 | OsRpn9a | Detail |
| CX1g003225 | 1:16,992,474-16,998,005 | - | C1H1g16898 | C2H1g19462 | LOC_Os01g32830 | Os01g0511600 | OsPLGG1 | Detail |
| CX1g003209 | 1:17,003,091-17,003,276 | + | - | - | - | Os01g0511700 | - | Detail |
| CX1g003780 | 1:17,012,725-17,012,937 | - | - | - | - | Os01g0511800 | - | Detail |
| CX1g003635 | 1:17,034,355-17,042,039 | + | C1H1g25757 | C2H1g19337 | LOC_Os01g32870 | Os01g0512100 | - | Detail |
| CX1g003040 | 1:17,043,337-17,046,174 | + | C1H1g18737 | C2H1g00528 | LOC_Os01g32880 | Os01g0512200 | - | Detail |
| CX1g002718 | 1:17,061,682-17,062,150 | + | - | C2H4g03445 | - | - | - | Detail |