| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g28847 | 9:14,495,660-14,501,828 | + | C1H9g14790 | CX9g056670 | LOC_Os09g28480 | Os09g0458400 | - | Detail |
| C2H9g06834 | 9:14,527,167-14,527,978 | + | C1H9g30078 | - | LOC_Os09g28520 | Os09g0459200 | SG1, OsSG1 | Detail |
| C2H9g17751 | 9:14,547,384-14,551,872 | - | C1H9g01784 | CX9g056105 | LOC_Os09g28560 | Os09g0459600 | - | Detail |
| C2H9g06752 | 9:14,555,807-14,567,696 | + | C1H9g28087 | CX9g057640 | LOC_Os09g28570 | Os09g0459800 | - | Detail |
| C2H9g25937 | 9:14,568,988-14,570,284 | - | C1H9g15128 | CX9g055374 | - | Os09g0459900 | - | Detail |
| C2H9g01353 | 9:14,575,563-14,576,426 | + | C1H9g20930 | CX9g056394 | LOC_Os09g28600 | Os09g0460100 | - | Detail |
| C2H9g17816 | 9:14,579,147-14,588,717 | + | C1H9g17836 | CX9g055971 | LOC_Os09g28610 | Os09g0460200 | - | Detail |
| C2H9g21518 | 9:14,592,660-14,593,598 | + | C1H9g11334 | CX9g055140 | LOC_Os09g28640 | Os09g0460500 | - | Detail |
| C2H9g29988 | 9:14,596,327-14,597,068 | - | - | - | - | - | - | Detail |
| C2H9g26252 | 9:14,598,004-14,598,942 | + | C1H9g08722 | CX9g055140 | LOC_Os09g28650 | Os09g0460700 | - | Detail |
| C2H9g05249 | 9:14,628,687-14,629,661 | - | C1H9g31584 | CX9g055140 | LOC_Os09g28750 | Os09g0462200 | - | Detail |
| C2H9g03017 | 9:14,629,957-14,630,593 | - | C1H9g31193 | - | - | Os09g0462301 | - | Detail |
| C2H9g27701 | 9:14,634,127-14,636,646 | + | C1H9g18452 | CX9g057311 | LOC_Os09g28770 | Os09g0462400 | OsMATL2, OspPLAIIeta, OspPLA-IIalpha | Detail |
| C2H9g19629 | 9:14,637,145-14,639,254 | + | C1H9g29610 | CX9g056435 | LOC_Os09g28780 | - | - | Detail |
| C2H9g05705 | 9:14,650,276-14,654,133 | + | C1H9g28013 | CX9g055048 | LOC_Os09g28810 | Os09g0462700 | - | Detail |
| C2H9g21321 | 9:14,655,361-14,655,770 | + | C1H9g15723 | - | - | Os09g0462850 | - | Detail |
| C2H9g19364 | 9:14,657,776-14,660,369 | - | C1H9g15089 | CX9g057216 | LOC_Os09g28830 | Os09g0462875 | - | Detail |
| C2H9g06754 | 9:14,662,217-14,665,042 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | Os09g0463100 | - | Detail |
| C2H9g23768 | 9:14,665,134-14,667,009 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | - | - | Detail |
| C2H9g26932 | 9:14,677,261-14,679,579 | - | C1H9g16758 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004589 | 1:16,839,672-16,839,896 | + | C1H3g13406 | - | - | - | - | Detail |
| CX1g005301 | 1:16,847,211-16,847,621 | - | - | - | - | Os01g0509750 | - | Detail |
| CX1g001437 | 1:16,850,593-16,853,628 | + | C1H1g15462 | C2H1g19341 | LOC_Os01g32640 | Os01g0509900 | - | Detail |
| CX1g001296 | 1:16,854,526-16,854,792 | + | - | - | - | - | - | Detail |
| CX1g000669 | 1:16,866,973-16,871,668 | + | C1H1g09530 | C2H1g03532 | LOC_Os01g32660 | Os01g0510100 | OsMKK6, OsMEK1 | Detail |
| CX1g006994 | 1:16,873,670-16,874,014 | - | - | - | LOC_Os01g32670 | Os01g0510200 | - | Detail |
| CX1g001061 | 1:16,883,310-16,896,998 | + | C1H1g03786 | C2H1g05772 | LOC_Os01g32710 | Os01g0510500 | - | Detail |
| CX1g004721 | 1:16,898,489-16,901,909 | - | C1H1g15241 | C2H1g08671 | LOC_Os01g32730 | Os01g0510600 | OsFLU1, OXP | Detail |
| CX1g000908 | 1:16,910,858-16,917,965 | - | C1H1g26631 | C2H1g26446 | LOC_Os01g32750 | Os01g0510800 | - | Detail |
| CX1g001274 | 1:16,919,188-16,919,724 | - | C1H1g18869 | C2H1g19008 | LOC_Os04g08170 | Os01g0759200 | OsCIPK30 | Detail |
| CX1g001608 | 1:16,925,929-16,926,843 | + | - | - | - | - | - | Detail |
| CX1g002333 | 1:16,964,303-16,966,674 | - | C1H1g16518 | C2H1g29547 | LOC_Os01g32780 | Os01g0511100 | OsUSP5 | Detail |
| CX1g000349 | 1:16,969,577-16,971,590 | - | C1H1g30895 | C2H1g25988 | LOC_Os01g32790 | Os01g0511200 | - | Detail |
| CX1g005541 | 1:16,973,592-16,976,641 | - | C1H1g00873 | C2H1g01415 | LOC_Os01g32800 | Os01g0511300 | OsRpn9a | Detail |
| CX1g003225 | 1:16,992,474-16,998,005 | - | C1H1g16898 | C2H1g19462 | LOC_Os01g32830 | Os01g0511600 | OsPLGG1 | Detail |
| CX1g003209 | 1:17,003,091-17,003,276 | + | - | - | - | Os01g0511700 | - | Detail |
| CX1g003780 | 1:17,012,725-17,012,937 | - | - | - | - | Os01g0511800 | - | Detail |
| CX1g003635 | 1:17,034,355-17,042,039 | + | C1H1g25757 | C2H1g19337 | LOC_Os01g32870 | Os01g0512100 | - | Detail |
| CX1g003040 | 1:17,043,337-17,046,174 | + | C1H1g18737 | C2H1g00528 | LOC_Os01g32880 | Os01g0512200 | - | Detail |
| CX1g002718 | 1:17,061,682-17,062,150 | + | - | C2H4g03445 | - | - | - | Detail |