| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12726 | 1:34,938,831-34,939,619 | + | C2H1g20697 | CX1g003493 | LOC_Os01g67950 | Os01g0907200 | - | Detail |
| C1H1g26541 | 1:34,942,504-34,947,620 | + | C2H1g10610 | CX1g004144 | LOC_Os01g67960 | Os01g0907300 | - | Detail |
| C1H1g18538 | 1:34,948,320-34,955,231 | + | C2H1g19705 | CX1g000822 | LOC_Os01g67970 | Os01g0907400 | JMJ705 | Detail |
| C1H1g19874 | 1:34,956,430-34,957,545 | + | C2H1g29254 | CX1g000036 | LOC_Os01g67980 | Os01g0907600 | OsSAG12-1 | Detail |
| C1H1g08768 | 1:34,972,914-34,976,480 | + | C2H1g19503 | CX1g000912 | LOC_Os01g68000 | Os01g0907900 | PLA2, pla2, pla2(pla2-1, pla2-2), plt2, LHD2 | Detail |
| C1H1g13810 | 1:34,987,033-34,989,975 | - | C2H1g14371 | CX1g000788 | LOC_Os01g68010 | Os01g0908100 | - | Detail |
| C1H1g00934 | 1:34,993,325-34,997,431 | + | C2H1g27794 | CX1g002877 | LOC_Os01g68020 | Os01g0908200 | OsBT | Detail |
| C1H1g26380 | 1:34,998,549-34,999,821 | - | C2H1g06918 | CX1g005492 | LOC_Os01g68030 | Os01g0908400 | - | Detail |
| C1H1g26157 | 1:35,001,120-35,004,353 | - | C2H1g30537 | CX1g002681 | LOC_Os01g68040 | Os01g0908500 | - | Detail |
| C1H1g02663 | 1:35,011,447-35,013,794 | + | C2H1g27819 | CX1g003019 | LOC_Os01g68050 | Os01g0908600 | OsProT1 | Detail |
| C1H1g28238 | 1:35,014,156-35,018,530 | - | C2H1g20684 | CX1g003471 | LOC_Os01g68060 | Os01g0908700 | - | Detail |
| C1H1g12819 | 1:35,026,038-35,027,558 | + | C2H1g22636 | CX1g001370 | LOC_Os01g68070 | Os01g0908800 | - | Detail |
| C1H1g18966 | 1:35,031,109-35,032,479 | - | - | CX1g007120 | LOC_Os01g68090 | Os01g0909000 | - | Detail |
| C1H1g09218 | 1:35,033,587-35,036,812 | + | C2H1g29519 | CX1g001897 | LOC_Os01g68104 | Os01g0909100 | - | Detail |
| C1H1g22460 | 1:35,039,709-35,040,078 | - | C2H1g05938 | - | - | Os01g0909150 | - | Detail |
| C1H1g21604 | 1:35,041,397-35,051,861 | - | C2H1g23470 | CX1g001307 | LOC_Os01g68120 | Os01g0909200 | OsDCL3a | Detail |
| C1H1g09277 | 1:35,055,480-35,055,878 | + | C2H1g03983 | CX1g000844 | LOC_Os01g68130 | - | - | Detail |
| C1H1g24131 | 1:35,056,030-35,059,812 | + | C2H1g03983 | CX1g000844 | LOC_Os01g68130 | Os01g0909300 | - | Detail |
| C1H1g09913 | 1:35,060,666-35,061,631 | - | - | CX1g002611 | LOC_Os01g68140 | Os01g0909400 | - | Detail |
| C1H1g04879 | 1:35,067,984-35,071,444 | + | C2H1g20920 | CX1g003036 | LOC_Os01g68260 | Os01g0971200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004589 | 1:16,839,672-16,839,896 | + | C1H3g13406 | - | - | - | - | Detail |
| CX1g005301 | 1:16,847,211-16,847,621 | - | - | - | - | Os01g0509750 | - | Detail |
| CX1g001437 | 1:16,850,593-16,853,628 | + | C1H1g15462 | C2H1g19341 | LOC_Os01g32640 | Os01g0509900 | - | Detail |
| CX1g001296 | 1:16,854,526-16,854,792 | + | - | - | - | - | - | Detail |
| CX1g000669 | 1:16,866,973-16,871,668 | + | C1H1g09530 | C2H1g03532 | LOC_Os01g32660 | Os01g0510100 | OsMKK6, OsMEK1 | Detail |
| CX1g006994 | 1:16,873,670-16,874,014 | - | - | - | LOC_Os01g32670 | Os01g0510200 | - | Detail |
| CX1g001061 | 1:16,883,310-16,896,998 | + | C1H1g03786 | C2H1g05772 | LOC_Os01g32710 | Os01g0510500 | - | Detail |
| CX1g004721 | 1:16,898,489-16,901,909 | - | C1H1g15241 | C2H1g08671 | LOC_Os01g32730 | Os01g0510600 | OsFLU1, OXP | Detail |
| CX1g000908 | 1:16,910,858-16,917,965 | - | C1H1g26631 | C2H1g26446 | LOC_Os01g32750 | Os01g0510800 | - | Detail |
| CX1g001274 | 1:16,919,188-16,919,724 | - | C1H1g18869 | C2H1g19008 | LOC_Os04g08170 | Os01g0759200 | OsCIPK30 | Detail |
| CX1g001608 | 1:16,925,929-16,926,843 | + | - | - | - | - | - | Detail |
| CX1g002333 | 1:16,964,303-16,966,674 | - | C1H1g16518 | C2H1g29547 | LOC_Os01g32780 | Os01g0511100 | OsUSP5 | Detail |
| CX1g000349 | 1:16,969,577-16,971,590 | - | C1H1g30895 | C2H1g25988 | LOC_Os01g32790 | Os01g0511200 | - | Detail |
| CX1g005541 | 1:16,973,592-16,976,641 | - | C1H1g00873 | C2H1g01415 | LOC_Os01g32800 | Os01g0511300 | OsRpn9a | Detail |
| CX1g003225 | 1:16,992,474-16,998,005 | - | C1H1g16898 | C2H1g19462 | LOC_Os01g32830 | Os01g0511600 | OsPLGG1 | Detail |
| CX1g003209 | 1:17,003,091-17,003,276 | + | - | - | - | Os01g0511700 | - | Detail |
| CX1g003780 | 1:17,012,725-17,012,937 | - | - | - | - | Os01g0511800 | - | Detail |
| CX1g003635 | 1:17,034,355-17,042,039 | + | C1H1g25757 | C2H1g19337 | LOC_Os01g32870 | Os01g0512100 | - | Detail |
| CX1g003040 | 1:17,043,337-17,046,174 | + | C1H1g18737 | C2H1g00528 | LOC_Os01g32880 | Os01g0512200 | - | Detail |
| CX1g002718 | 1:17,061,682-17,062,150 | + | - | C2H4g03445 | - | - | - | Detail |