| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g17746 | 3:5,298,248-5,304,864 | + | C1H3g17331 | CX3g028416 | LOC_Os03g11520 | Os03g0213900 | - | Detail |
| C2H3g08543 | 3:5,305,257-5,310,545 | + | C1H3g12951 | CX3g030880 | LOC_Os03g11530 | Os03g0214000 | - | Detail |
| C2H3g18859 | 3:5,311,539-5,315,043 | + | C1H3g14932 | CX3g028514 | LOC_Os03g11540 | Os03g0214100 | OsRPA70b | Detail |
| C2H3g25555 | 3:5,315,485-5,320,858 | - | C1H3g10644 | CX3g029924 | LOC_Os03g11550 | Os03g0214200 | - | Detail |
| C2H3g22606 | 3:5,325,484-5,328,881 | - | C1H3g04750 | CX3g027534 | LOC_Os03g11560 | Os03g0214400 | - | Detail |
| C2H3g22039 | 3:5,331,057-5,334,978 | + | C1H3g15538 | CX3g027043 | LOC_Os03g11570 | Os03g0214600 | - | Detail |
| C2H3g03744 | 3:5,337,484-5,342,418 | - | C1H3g09681 | - | - | - | - | Detail |
| C2H3g29664 | 3:5,344,016-5,347,863 | - | C1H3g00304 | CX3g025722 | LOC_Os03g11590 | Os03g0215000 | - | Detail |
| C2H3g24849 | 3:5,374,993-5,381,339 | + | C1H3g11825 | CX3g029987 | LOC_Os03g11600 | Os03g0215200 | DL, dl(lop), lop, dl, dl1 | Detail |
| C2H3g11270 | 3:5,386,951-5,389,327 | - | C1H3g00757 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g18287 | 3:5,395,313-5,395,507 | - | C1H3g04456 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C2H3g25916 | 3:5,416,591-5,421,828 | + | C1H3g30377 | CX3g026583 | LOC_Os03g11650 | Os03g0215700 | - | Detail |
| C2H3g12512 | 3:5,422,610-5,426,000 | + | C1H3g02997 | CX3g026851 | LOC_Os03g11660 | Os03g0215800 | - | Detail |
| C2H3g19342 | 3:5,426,491-5,428,521 | - | C1H3g12813 | CX3g025630 | LOC_Os03g11670 | Os03g0215900 | OsPPR676, OsATP4 | Detail |
| C2H3g13701 | 3:5,436,359-5,437,252 | - | C1H3g00186 | CX3g030485 | LOC_Os03g11680 | Os03g0216000 | - | Detail |
| C2H3g30038 | 3:5,450,317-5,452,147 | + | C1H3g15045 | CX3g027591 | LOC_Os03g11690 | Os03g0216300 | - | Detail |
| C2H3g29170 | 3:5,452,840-5,453,269 | + | - | - | - | - | - | Detail |
| C2H3g05049 | 3:5,453,922-5,455,100 | - | C1H3g15740 | CX3g029865 | LOC_Os03g11700 | Os03g0216400 | - | Detail |
| C2H3g19799 | 3:5,456,253-5,457,305 | - | C1H3g17461 | CX3g030660 | LOC_Os03g11710 | Os03g0216500 | - | Detail |
| C2H3g02073 | 3:5,459,766-5,463,790 | + | C1H3g21782 | CX3g030548 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026067 | 3:24,465,845-24,466,534 | - | C1H3g28997 | C2H3g20889 | LOC_Os03g46070 | Os03g0663500 | - | Detail |
| CX3g030773 | 3:24,490,882-24,494,042 | + | C1H3g12643 | C2H3g27587 | LOC_Os03g46090 | Os03g0663700 | - | Detail |
| CX3g031226 | 3:24,497,352-24,499,469 | - | C1H3g29144 | C2H3g16281 | LOC_Os03g46100 | Os03g0663800 | FLOC1 | Detail |
| CX3g026799 | 3:24,500,581-24,502,979 | - | C1H3g10937 | C2H3g05304 | LOC_Os03g46110 | Os03g0663900 | EPAD1 | Detail |
| CX3g027937 | 3:24,507,307-24,513,532 | + | C1H3g22844 | C2H3g13262 | LOC_Os03g46140 | Os03g0664300 | - | Detail |
| CX3g030100 | 3:24,514,269-24,515,005 | + | C1H3g22844 | C2H3g03743 | LOC_Os03g46150 | Os03g0664400 | - | Detail |
| CX3g026593 | 3:24,522,034-24,522,816 | + | C1H3g05960 | C2H3g25255 | LOC_Os03g46180 | Os03g0664600 | - | Detail |
| CX3g028782 | 3:24,523,828-24,526,469 | - | C1H3g08349 | C2H3g30526 | LOC_Os03g46190 | Os03g0664700 | - | Detail |
| CX3g030949 | 3:24,526,671-24,527,378 | + | C1H3g19227 | C2H3g29200 | LOC_Os03g46200 | Os03g0664800 | - | Detail |
| CX3g028453 | 3:24,534,953-24,535,893 | + | C1H3g19227 | C2H3g29200 | LOC_Os03g46250 | Os03g0665000 | - | Detail |
| CX3g028439 | 3:24,538,212-24,540,654 | - | C1H3g03624 | C2H3g13481 | LOC_Os03g46260 | Os03g0665200 | OsFLZ11 | Detail |
| CX3g025809 | 3:24,568,980-24,569,327 | + | C1H3g16143 | C2H3g01208 | LOC_Os03g46300 | Os03g0665700 | - | Detail |
| CX3g030454 | 3:24,574,222-24,577,129 | + | C1H3g02596 | C2H3g02010 | LOC_Os03g46310 | Os03g0665800 | - | Detail |
| CX3g030422 | 3:24,582,231-24,588,605 | + | C1H3g06192 | C2H3g24958 | LOC_Os03g46330 | Os03g0666100 | - | Detail |
| CX3g025831 | 3:24,589,210-24,592,713 | - | C1H3g26270 | C2H3g06923 | LOC_Os03g46340 | Os03g0666200 | OsSWAP70A | Detail |
| CX3g029931 | 3:24,598,036-24,599,158 | + | C1H3g10336 | C2H3g08439 | LOC_Os03g46350 | Os03g0666300 | - | Detail |
| CX3g027340 | 3:24,608,622-24,612,023 | + | C1H3g06798 | C2H3g02623 | LOC_Os03g46390 | Os03g0666500 | - | Detail |
| CX3g026425 | 3:24,615,404-24,618,001 | - | C1H3g03865 | C2H3g22843 | LOC_Os03g46410 | Os03g0666700 | - | Detail |
| CX3g029763 | 3:24,622,917-24,623,252 | + | - | - | - | Os03g0666800 | - | Detail |
| CX3g026086 | 3:24,628,705-24,631,260 | - | C1H3g13561 | C2H3g09706 | LOC_Os03g46440 | Os03g0667100 | - | Detail |