| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01597 | 1:35,746,910-35,752,743 | - | C2H1g25723 | CX1g001516 | LOC_Os01g69920 | Os01g0923700 | HK3, OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b | Detail |
| C1H1g00107 | 1:35,785,776-35,788,010 | + | C2H1g29022 | CX1g006361 | LOC_Os01g69930 | Os01g0923800 | - | Detail |
| C1H1g02952 | 1:35,789,350-35,792,293 | - | C2H1g05728 | CX1g005730 | LOC_Os01g69940 | Os01g0923900 | - | Detail |
| C1H1g29264 | 1:35,799,799-35,801,270 | + | C2H1g01923 | CX1g005835 | LOC_Os01g69950 | Os01g0924000 | - | Detail |
| C1H1g10877 | 1:35,806,031-35,806,597 | + | - | CX1g002496 | LOC_Os01g69960 | Os01g0924200 | - | Detail |
| C1H1g10772 | 1:35,809,040-35,813,366 | - | C2H1g07961 | CX1g006541 | LOC_Os01g69970 | Os01g0924300 | - | Detail |
| C1H1g13895 | 1:35,823,618-35,824,574 | + | - | - | LOC_Os01g69980 | Os01g0924400 | - | Detail |
| C1H1g29827 | 1:35,829,371-35,836,055 | - | C2H1g18855 | CX1g005525 | LOC_Os01g69990 | Os01g0924600 | MHZ9 | Detail |
| C1H1g12982 | 1:35,840,514-35,841,436 | + | C2H1g15591 | CX1g002447 | LOC_Os01g70000 | Os01g0924700 | - | Detail |
| C1H1g07165 | 1:35,842,213-35,844,292 | - | C2H1g25318 | CX1g000477 | LOC_Os01g70010 | Os01g0924800 | - | Detail |
| C1H1g27548 | 1:35,847,736-35,853,749 | + | C2H1g12545 | CX1g006526 | LOC_Os01g70020 | Os01g0924900 | - | Detail |
| C1H1g13467 | 1:35,855,067-35,857,104 | + | C2H1g09893 | CX1g005950 | LOC_Os01g63480 | Os01g0924933 | DPW2 | Detail |
| C1H1g03684 | 1:35,861,149-35,861,667 | - | - | CX1g001933 | LOC_Os01g70050 | Os01g0924966 | - | Detail |
| C1H1g14986 | 1:35,874,545-35,890,346 | - | C2H1g12590 | CX1g000475 | LOC_Os01g70060 | Os01g0925000 | - | Detail |
| C1H1g20180 | 1:35,891,826-35,894,737 | - | C2H1g27652 | CX1g005348 | LOC_Os01g70080 | Os01g0335700 | - | Detail |
| C1H1g31830 | 1:35,895,883-35,896,588 | - | C2H1g27652 | CX1g005348 | LOC_Os01g70080 | Os01g0925100 | - | Detail |
| C1H1g19559 | 1:35,898,782-35,901,274 | + | C2H1g21256 | CX1g006900 | LOC_Os01g70090 | Os01g0925200 | - | Detail |
| C1H1g13464 | 1:35,901,649-35,904,771 | - | C2H1g13602 | CX1g005045 | LOC_Os01g70100 | Os01g0925300 | - | Detail |
| C1H1g13112 | 1:35,908,415-35,909,209 | + | C2H1g09289 | CX1g002813 | LOC_Os01g70110 | Os01g0925400 | - | Detail |
| C1H1g25081 | 1:35,919,371-35,923,240 | + | C2H1g09731 | CX1g005897 | LOC_Os01g70120 | Os01g0925600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029288 | 3:23,615,616-23,616,401 | - | C1H3g01932 | C2H3g09347 | LOC_Os03g44450 | Os03g0646400 | - | Detail |
| CX3g025480 | 3:23,620,985-23,628,787 | + | C1H3g04677 | C2H3g17378 | LOC_Os03g44484 | Os03g0646800 | - | Detail |
| CX3g030610 | 3:23,630,310-23,638,072 | - | C1H3g15319 | C2H3g09600 | LOC_Os03g44500 | Os03g0646900 | OsPPKL1, GL3.1 | Detail |
| CX3g026267 | 3:23,643,206-23,643,670 | - | - | - | - | - | - | Detail |
| CX3g025993 | 3:23,648,861-23,649,448 | + | - | - | LOC_Os03g44520 | Os03g0647400 | - | Detail |
| CX3g028021 | 3:23,650,683-23,654,082 | - | C1H3g31672 | C2H3g20933 | LOC_Os03g44530 | Os03g0647500 | - | Detail |
| CX3g025465 | 3:23,657,406-23,662,803 | - | C1H3g00783 | C2H3g08581 | LOC_Os03g44540 | Os03g0647600 | OsNF-YA3, HAP2H | Detail |
| CX3g030972 | 3:23,667,023-23,667,196 | + | - | - | - | - | - | Detail |
| CX3g026616 | 3:23,678,457-23,681,709 | - | C1H3g28506 | C2H3g28034 | LOC_Os03g44560 | Os03g0647800 | - | Detail |
| CX3g029626 | 3:23,682,198-23,683,115 | + | - | - | - | - | - | Detail |
| CX3g030626 | 3:23,686,753-23,687,841 | - | C1H3g02569 | C2H3g30622 | LOC_Os03g44580 | Os03g0648100 | - | Detail |
| CX3g026899 | 3:23,696,380-23,702,734 | - | C1H3g04139 | C2H3g20748 | LOC_Os03g44610 | Os03g0648300 | - | Detail |
| CX3g030255 | 3:23,707,644-23,710,797 | + | C1H3g01950 | C2H3g20479 | LOC_Os03g44620 | Os03g0648400 | - | Detail |
| CX3g030166 | 3:23,711,390-23,711,935 | - | C1H3g13484 | C2H3g07590 | LOC_Os03g44630 | Os03g0648500 | - | Detail |
| CX3g026795 | 3:23,726,156-23,726,686 | + | C1H3g07849 | C2H3g07473 | LOC_Os03g44636 | Os03g0648600 | - | Detail |
| CX3g026344 | 3:23,731,031-23,732,029 | + | - | - | - | - | - | Detail |
| CX3g030053 | 3:23,734,337-23,737,754 | + | C1H3g12327 | C2H3g02590 | LOC_Os03g44660 | Os03g0648900 | - | Detail |
| CX3g030188 | 3:23,739,796-23,742,979 | - | C1H3g07360 | C2H3g08448 | LOC_Os03g44670 | Os03g0649000 | - | Detail |
| CX3g028790 | 3:23,762,428-23,765,436 | + | C1H3g11970 | C2H3g18182 | - | - | - | Detail |
| CX3g025229 | 3:23,811,787-23,813,796 | + | C1H3g26338 | C2H3g15030 | LOC_Os03g45300 | Os03g0164400 | - | Detail |