| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g07262 | 3:13,508,344-13,509,023 | - | C2H3g11438 | CX3g028361 | LOC_Os03g26490 | Os03g0381500 | - | Detail |
| C1H3g01880 | 3:13,605,373-13,611,010 | - | C2H3g10080 | CX3g027430 | LOC_Os03g26630 | Os03g0383800 | - | Detail |
| C1H3g04987 | 3:13,617,292-13,617,906 | + | C2H3g28106 | CX3g027286 | LOC_Os03g26650 | Os03g0383900 | - | Detail |
| C1H3g21136 | 3:13,620,841-13,623,028 | - | C2H3g10667 | CX3g031075 | LOC_Os03g24930 | Os03g0223000 | - | Detail |
| C1H3g05555 | 3:13,624,422-13,625,249 | - | - | - | - | - | - | Detail |
| C1H3g20814 | 3:13,625,890-13,626,646 | - | - | - | - | - | - | Detail |
| C1H3g24446 | 3:13,660,957-13,662,361 | - | C2H3g18257 | CX3g030150 | LOC_Os03g26680 | Os03g0333800 | - | Detail |
| C1H3g01567 | 3:13,666,763-13,670,088 | - | C2H3g23472 | - | LOC_Os03g26791 | Os03g0385301 | - | Detail |
| C1H3g30590 | 3:13,677,176-13,679,603 | + | C2H3g13722 | CX3g027750 | LOC_Os03g26820 | Os03g0385400 | - | Detail |
| C1H3g25255 | 3:13,693,867-13,695,084 | - | C2H3g05960 | CX3g028822 | LOC_Os03g26860 | Os03g0385900 | - | Detail |
| C1H3g24605 | 3:13,702,263-13,707,656 | + | C2H3g18357 | CX3g027474 | LOC_Os03g26870 | Os03g0386000 | SRWD5, SRWD5, OsWD40-73 | Detail |
| C1H3g14788 | 3:13,707,994-13,708,507 | - | C2H3g30684 | CX3g028061 | LOC_Os02g24750 | Os03g0562000 | - | Detail |
| C1H3g29954 | 3:13,711,216-13,713,080 | - | C2H3g21328 | CX3g026750 | - | - | - | Detail |
| C1H3g27294 | 3:13,773,336-13,775,764 | + | C2H3g25176 | CX3g027835 | LOC_Os03g26910 | Os03g0386500 | - | Detail |
| C1H3g19318 | 3:13,791,372-13,793,748 | + | C2H3g11441 | CX3g024963 | LOC_Os03g26920 | Os03g0386700 | - | Detail |
| C1H3g12347 | 3:13,796,459-13,799,501 | + | C2H3g16874 | CX3g024963 | LOC_Os03g26930 | Os03g0386800 | - | Detail |
| C1H3g29910 | 3:13,798,994-13,800,362 | - | - | - | - | - | - | Detail |
| C1H3g25240 | 3:13,809,874-13,819,234 | + | C2H3g12157 | CX3g030527 | LOC_Os03g26960 | Os03g0387000 | OsDNA2_2 | Detail |
| C1H3g24830 | 3:13,820,392-13,825,084 | + | C2H3g05360 | CX3g026325 | LOC_Os03g26970 | Os03g0387100 | TT1, OsPAB1, PAB1, OsTT1 | Detail |
| C1H3g11568 | 3:13,857,808-13,858,736 | + | - | CX3g026429 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028784 | 3:21,608,323-21,608,496 | - | - | - | - | Os03g0606466 | - | Detail |
| CX3g031311 | 3:21,611,365-21,611,544 | - | - | - | - | Os02g0188201 | - | Detail |
| CX3g028911 | 3:21,618,849-21,619,244 | - | - | - | - | - | - | Detail |
| CX3g026651 | 3:21,621,431-21,621,703 | + | - | - | - | Os03g0824350 | - | Detail |
| CX3g030042 | 3:21,637,207-21,637,410 | + | - | - | LOC_Os03g01442 | Os03g0104800 | - | Detail |
| CX3g025127 | 3:21,641,274-21,643,745 | - | C1H3g29161 | C2H3g00163 | LOC_Os03g41064 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| CX3g026140 | 3:21,667,375-21,674,743 | + | C1H3g18716 | C2H3g06432 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| CX3g027100 | 3:21,694,149-21,696,643 | - | C1H3g16629 | C2H3g23306 | - | Os03g0653900 | - | Detail |
| CX3g027202 | 3:21,704,222-21,704,458 | - | - | - | - | Os07g0464001 | - | Detail |
| CX3g030355 | 3:21,709,167-21,710,921 | + | C1H3g27711 | C2H3g21545 | - | Os03g0668000 | - | Detail |
| CX3g029197 | 3:21,763,656-21,764,057 | + | - | - | LOC_Os01g54740 | Os06g0629362 | - | Detail |
| CX3g030299 | 3:21,791,203-21,791,412 | + | C1H3g06149 | - | - | - | - | Detail |
| CX3g029102 | 3:21,839,490-21,841,303 | + | C1H3g12335 | C2H3g26370 | LOC_Os03g41100 | Os03g0607600 | - | Detail |
| CX3g030005 | 3:21,845,082-21,845,789 | - | C1H3g17605 | C2H3g14398 | LOC_Os03g41110 | Os03g0607700 | - | Detail |
| CX3g025971 | 3:21,850,864-21,851,424 | - | C1H3g10600 | C2H3g00849 | - | Os03g0607800 | - | Detail |
| CX3g026864 | 3:21,856,792-21,857,070 | - | - | - | LOC_Os03g41130 | Os03g0608000 | - | Detail |
| CX3g029637 | 3:21,888,835-21,889,838 | + | C1H3g07250 | C2H3g30635 | LOC_Os03g41290 | - | - | Detail |
| CX3g030280 | 3:21,901,360-21,910,847 | - | C1H3g03137 | C2H3g13794 | LOC_Os03g41300 | Os03g0344300 | OsFUG1, OsFUG1.3 | Detail |
| CX3g031263 | 3:21,915,874-21,916,270 | + | C1H3g01434 | C2H3g28367 | LOC_Os03g41300 | Os07g0477000 | - | Detail |
| CX3g029907 | 3:21,920,282-21,922,305 | - | C1H3g20844 | C2H3g17106 | LOC_Os03g41330 | Os03g0609500 | OsLBD38 | Detail |