| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01619 | 3:3,425,570-3,428,849 | - | C1H3g05067 | CX3g030931 | LOC_Os03g07880 | Os03g0174900 | OsNF-YA1, HAP2C | Detail |
| C2H3g14257 | 3:3,437,994-3,438,986 | + | C1H3g04156 | CX3g031308 | LOC_Os03g07890 | Os03g0175200 | - | Detail |
| C2H3g21508 | 3:3,444,728-3,445,051 | + | C1H3g18648 | CX3g030291 | - | - | - | Detail |
| C2H3g07896 | 3:3,445,637-3,449,942 | + | C1H3g26233 | CX3g025046 | LOC_Os03g07910 | Os03g0175600 | - | Detail |
| C2H3g28877 | 3:3,458,697-3,459,635 | - | C1H3g08447 | CX3g027383 | LOC_Os03g07920 | Os03g0175800 | BG1 | Detail |
| C2H3g25222 | 3:3,464,246-3,472,300 | + | C1H3g27866 | CX3g031114 | LOC_Os03g07930 | Os03g0176100 | - | Detail |
| C2H3g11134 | 3:3,474,218-3,475,224 | - | C1H3g15288 | CX3g025943 | LOC_Os03g07940 | Os03g0232200 | - | Detail |
| C2H3g07082 | 3:3,475,333-3,478,034 | - | C1H3g31714 | CX3g025943 | LOC_Os03g19900 | Os03g0176300 | - | Detail |
| C2H3g25173 | 3:3,482,592-3,482,873 | + | - | CX3g029598 | LOC_Os03g07950 | Os03g0176500 | - | Detail |
| C2H3g21895 | 3:3,486,636-3,489,102 | - | C1H3g15283 | CX3g030266 | LOC_Os03g07960 | Os03g0176700 | - | Detail |
| C2H3g00013 | 3:3,490,597-3,494,393 | - | C1H3g23456 | CX3g029368 | LOC_Os03g07970 | Os03g0176800 | - | Detail |
| C2H3g04928 | 3:3,496,047-3,496,367 | - | C1H3g29339 | CX3g028066 | LOC_Os03g07980 | Os03g0176900 | - | Detail |
| C2H3g13522 | 3:3,499,952-3,503,260 | + | C1H3g11831 | CX3g029737 | LOC_Os03g07990 | Os03g0177000 | - | Detail |
| C2H3g03958 | 3:3,504,263-3,508,131 | + | C1H3g26527 | CX3g030435 | LOC_Os03g08000 | Os03g0177300 | - | Detail |
| C2H3g29734 | 3:3,508,804-3,511,802 | + | C1H3g16670 | CX3g025284 | LOC_Os03g08020 | Os03g0177500 | OsEF1A | Detail |
| C2H3g01446 | 3:3,514,961-3,517,138 | + | C1H3g02996 | CX3g026443 | LOC_Os03g08050 | Os03g0178000 | - | Detail |
| C2H3g10879 | 3:3,524,904-3,528,224 | + | C1H3g00802 | CX3g028070 | LOC_Os03g08020 | Os03g0178000 | - | Detail |
| C2H3g13691 | 3:3,531,614-3,534,557 | + | C1H3g02996 | CX3g025284 | LOC_Os03g08050 | Os03g0177500 | OsEF1A | Detail |
| C2H3g00449 | 3:3,534,635-3,541,746 | - | C1H3g20350 | CX3g028367 | LOC_Os03g08070 | Os03g0178100 | - | Detail |
| C2H3g25180 | 3:3,544,766-3,546,539 | + | C1H3g15649 | CX3g027428 | LOC_Os03g08080 | Os03g0178200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026097 | 3:21,380,277-21,384,963 | + | C1H3g17649 | C2H3g17661 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| CX3g026160 | 3:21,389,005-21,394,234 | - | C1H3g14588 | C2H3g06081 | LOC_Os03g40600 | Os03g0603100 | - | Detail |
| CX3g029655 | 3:21,408,767-21,409,003 | - | - | - | - | Os07g0464001 | - | Detail |
| CX3g026123 | 3:21,424,861-21,426,033 | - | - | - | LOC_Os03g40650 | Os03g0603300 | - | Detail |
| CX3g027440 | 3:21,437,681-21,438,094 | - | - | - | - | - | - | Detail |
| CX3g026611 | 3:21,455,200-21,456,726 | + | - | - | - | Os03g0603500 | - | Detail |
| CX3g029684 | 3:21,459,463-21,462,273 | + | C1H3g26758 | C2H3g09028 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| CX3g028487 | 3:21,463,866-21,464,135 | - | C1H11g16302 | C2H11g04601 | - | - | - | Detail |
| CX3g027402 | 3:21,467,278-21,475,547 | + | C1H3g07265 | C2H3g27980 | LOC_Os03g40690 | Os03g0569800 | - | Detail |
| CX3g028102 | 3:21,477,638-21,478,888 | + | - | - | LOC_Os03g40700 | Os03g0603800 | - | Detail |
| CX3g030467 | 3:21,508,206-21,509,684 | + | - | - | - | Os03g0757950 | - | Detail |
| CX3g030318 | 3:21,520,344-21,520,832 | + | - | - | LOC_Os03g40725 | Os03g0604500 | - | Detail |
| CX3g025313 | 3:21,531,971-21,532,696 | + | C1H3g27392 | C2H3g23447 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| CX3g029068 | 3:21,534,785-21,539,438 | - | C1H3g29572 | C2H3g01476 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| CX3g029593 | 3:21,562,757-21,565,048 | + | C1H3g00814 | C2H3g07310 | LOC_Os03g40830 | Os03g0605300 | - | Detail |
| CX3g028034 | 3:21,566,308-21,566,475 | - | - | - | - | - | - | Detail |
| CX3g030298 | 3:21,575,141-21,579,220 | - | C1H3g11700 | C2H3g22818 | LOC_Os03g40840 | Os03g0165900 | - | Detail |
| CX3g028391 | 3:21,581,331-21,582,149 | + | C1H3g31311 | C2H3g24067 | - | - | - | Detail |
| CX3g030284 | 3:21,584,907-21,587,745 | + | - | - | LOC_Os03g40900 | Os03g0606200 | RMtATP6 | Detail |
| CX3g025804 | 3:21,591,918-21,593,920 | - | C1H3g15527 | C2H3g29089 | LOC_Os03g40930 | Os03g0606100 | - | Detail |