| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g01899 | 5:18,875,099-18,877,942 | + | C2H5g18865 | CX5g036944 | LOC_Os05g39310 | Os05g0469600 | Ospdc1 | Detail |
| C1H5g17771 | 5:18,881,373-18,881,975 | + | C2H5g07982 | CX5g040493 | LOC_Os05g39320 | Os05g0469800 | RRJ2, PDC1 | Detail |
| C1H5g02466 | 5:18,881,994-18,883,702 | + | C2H5g08481 | CX5g040493 | LOC_Os05g39320 | Os05g0469800 | RRJ2, PDC1 | Detail |
| C1H5g04421 | 5:18,884,566-18,887,625 | - | C2H5g06883 | CX5g040121 | LOC_Os05g39350 | Os05g0470000 | - | Detail |
| C1H5g12895 | 5:18,902,653-18,904,332 | + | C2H5g07736 | CX5g040095 | LOC_Os05g39380 | Os05g0470700 | - | Detail |
| C1H5g00959 | 5:18,906,484-18,910,205 | - | C2H5g12492 | CX5g040306 | LOC_Os05g39390 | Os05g0470800 | - | Detail |
| C1H5g29961 | 5:18,911,820-18,913,268 | + | C2H5g12700 | CX5g037125 | LOC_Os05g39400 | Os05g0470900 | - | Detail |
| C1H5g06052 | 5:18,913,490-18,917,156 | - | C2H5g26893 | CX5g036882 | LOC_Os05g39410 | Os05g0471000 | - | Detail |
| C1H5g06723 | 5:18,926,606-18,928,072 | - | - | - | - | - | - | Detail |
| C1H5g19650 | 5:18,928,515-18,929,420 | - | C2H5g07606 | - | - | - | - | Detail |
| C1H5g25585 | 5:18,930,484-18,931,254 | - | C2H5g10143 | CX5g037860 | LOC_Os05g39450 | Os05g0471350 | - | Detail |
| C1H5g09380 | 5:18,952,236-18,952,952 | + | C2H5g21299 | CX5g039840 | LOC_Os05g39500 | Os05g0472000 | OsG1L8 | Detail |
| C1H5g12229 | 5:18,966,051-18,970,708 | - | C2H5g25272 | CX5g036972 | LOC_Os05g39520 | Os05g0472200 | - | Detail |
| C1H5g23504 | 5:18,971,619-18,974,005 | - | C2H5g07324 | CX5g038206 | LOC_Os05g39530 | Os05g0472300 | - | Detail |
| C1H5g14755 | 5:18,982,528-18,986,510 | + | C2H5g02174 | CX5g040617 | LOC_Os05g39540 | Os05g0472400 | OsZIP9 | Detail |
| C1H5g09021 | 5:18,990,753-18,992,906 | + | C2H5g12063 | CX5g038639 | LOC_Os05g39560 | Os05g0472700 | OsZIP5 | Detail |
| C1H5g31249 | 5:19,004,727-19,005,392 | - | C2H5g11951 | CX5g039388 | LOC_Os05g39580 | Os05g0473000 | - | Detail |
| C1H5g27001 | 5:19,011,796-19,013,509 | + | - | CX5g036978 | - | - | - | Detail |
| C1H5g23864 | 5:19,014,778-19,016,340 | + | C2H5g19718 | CX5g039698 | LOC_Os05g39590 | Os05g0473300 | - | Detail |
| C1H5g20386 | 5:19,017,849-19,020,703 | + | C2H5g12883 | CX5g039234 | LOC_Os05g39600 | Os05g0473401 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026097 | 3:21,380,277-21,384,963 | + | C1H3g17649 | C2H3g17661 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| CX3g026160 | 3:21,389,005-21,394,234 | - | C1H3g14588 | C2H3g06081 | LOC_Os03g40600 | Os03g0603100 | - | Detail |
| CX3g029655 | 3:21,408,767-21,409,003 | - | - | - | - | Os07g0464001 | - | Detail |
| CX3g026123 | 3:21,424,861-21,426,033 | - | - | - | LOC_Os03g40650 | Os03g0603300 | - | Detail |
| CX3g027440 | 3:21,437,681-21,438,094 | - | - | - | - | - | - | Detail |
| CX3g026611 | 3:21,455,200-21,456,726 | + | - | - | - | Os03g0603500 | - | Detail |
| CX3g029684 | 3:21,459,463-21,462,273 | + | C1H3g26758 | C2H3g09028 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| CX3g028487 | 3:21,463,866-21,464,135 | - | C1H11g16302 | C2H11g04601 | - | - | - | Detail |
| CX3g027402 | 3:21,467,278-21,475,547 | + | C1H3g07265 | C2H3g27980 | LOC_Os03g40690 | Os03g0569800 | - | Detail |
| CX3g028102 | 3:21,477,638-21,478,888 | + | - | - | LOC_Os03g40700 | Os03g0603800 | - | Detail |
| CX3g030467 | 3:21,508,206-21,509,684 | + | - | - | - | Os03g0757950 | - | Detail |
| CX3g030318 | 3:21,520,344-21,520,832 | + | - | - | LOC_Os03g40725 | Os03g0604500 | - | Detail |
| CX3g025313 | 3:21,531,971-21,532,696 | + | C1H3g27392 | C2H3g23447 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| CX3g029068 | 3:21,534,785-21,539,438 | - | C1H3g29572 | C2H3g01476 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| CX3g029593 | 3:21,562,757-21,565,048 | + | C1H3g00814 | C2H3g07310 | LOC_Os03g40830 | Os03g0605300 | - | Detail |
| CX3g028034 | 3:21,566,308-21,566,475 | - | - | - | - | - | - | Detail |
| CX3g030298 | 3:21,575,141-21,579,220 | - | C1H3g11700 | C2H3g22818 | LOC_Os03g40840 | Os03g0165900 | - | Detail |
| CX3g028391 | 3:21,581,331-21,582,149 | + | C1H3g31311 | C2H3g24067 | - | - | - | Detail |
| CX3g030284 | 3:21,584,907-21,587,745 | + | - | - | LOC_Os03g40900 | Os03g0606200 | RMtATP6 | Detail |
| CX3g025804 | 3:21,591,918-21,593,920 | - | C1H3g15527 | C2H3g29089 | LOC_Os03g40930 | Os03g0606100 | - | Detail |