| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g08501 | 5:13,091,501-13,092,025 | + | C2H5g20870 | CX5g038186 | LOC_Os05g27780 | Os05g0344200 | - | Detail |
| C1H5g01346 | 5:13,104,959-13,107,752 | - | C2H5g20264 | CX5g038759 | LOC_Os05g27749 | Os05g0343800 | - | Detail |
| C1H5g27385 | 5:13,117,535-13,118,678 | - | C2H5g04895 | CX5g038298 | LOC_Os05g28150 | Os05g0574000 | - | Detail |
| C1H5g10495 | 5:13,124,228-13,124,955 | - | C2H5g24296 | - | LOC_Os05g28170 | Os05g0349000 | - | Detail |
| C1H5g28470 | 5:13,125,004-13,125,391 | - | C2H5g01277 | - | - | - | - | Detail |
| C1H5g17654 | 5:13,129,514-13,140,472 | - | C2H5g21735 | CX5g038977 | LOC_Os05g28180 | Os05g0349200 | - | Detail |
| C1H5g06860 | 5:13,154,074-13,154,778 | + | C2H5g17650 | CX5g037238 | - | Os05g0349400 | - | Detail |
| C1H5g27836 | 5:13,155,919-13,157,340 | - | C2H5g21599 | CX5g037323 | LOC_Os05g28190 | Os05g0349500 | - | Detail |
| C1H5g13828 | 5:13,162,845-13,168,627 | + | C2H5g06848 | CX5g039025 | LOC_Os05g28200 | Os05g0349700 | - | Detail |
| C1H5g05895 | 5:13,169,734-13,170,127 | - | C2H5g23580 | CX5g036783 | LOC_Os05g28210 | Os05g0349800 | - | Detail |
| C1H5g13261 | 5:13,172,837-13,173,611 | - | C2H5g02639 | - | - | - | - | Detail |
| C1H5g14457 | 5:13,192,670-13,196,676 | + | C2H5g29583 | CX5g039857 | LOC_Os05g28280 | Os05g0350500 | - | Detail |
| C1H5g17562 | 5:13,200,849-13,203,424 | + | C2H5g21599 | CX5g039007 | LOC_Os05g28290 | Os05g0350600 | - | Detail |
| C1H5g16123 | 5:13,206,195-13,217,685 | + | C2H5g07484 | CX5g037642 | LOC_Os05g28300 | Os05g0350700 | - | Detail |
| C1H5g17008 | 5:13,222,024-13,222,950 | - | C2H5g28285 | CX5g040736 | LOC_Os05g28320 | Os05g0350900 | Os2R_MYB54 | Detail |
| C1H5g12930 | 5:13,237,625-13,238,428 | - | C2H5g09274 | CX5g038612 | LOC_Os05g28350 | Os05g0351200 | - | Detail |
| C1H5g29097 | 5:13,259,584-13,262,512 | - | C2H5g17200 | CX5g038755 | LOC_Os05g28370 | Os05g0351500 | - | Detail |
| C1H5g24445 | 5:13,285,991-13,290,668 | + | C2H5g14159 | CX5g039488 | LOC_Os05g28460 | Os05g0352700 | - | Detail |
| C1H5g20523 | 5:13,295,782-13,297,507 | + | C2H5g18746 | CX5g039121 | - | - | - | Detail |
| C1H5g18199 | 5:13,302,108-13,306,187 | + | C2H5g08977 | CX5g038297 | LOC_Os05g28470 | Os05g0352750 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026097 | 3:21,380,277-21,384,963 | + | C1H3g17649 | C2H3g17661 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| CX3g026160 | 3:21,389,005-21,394,234 | - | C1H3g14588 | C2H3g06081 | LOC_Os03g40600 | Os03g0603100 | - | Detail |
| CX3g029655 | 3:21,408,767-21,409,003 | - | - | - | - | Os07g0464001 | - | Detail |
| CX3g026123 | 3:21,424,861-21,426,033 | - | - | - | LOC_Os03g40650 | Os03g0603300 | - | Detail |
| CX3g027440 | 3:21,437,681-21,438,094 | - | - | - | - | - | - | Detail |
| CX3g026611 | 3:21,455,200-21,456,726 | + | - | - | - | Os03g0603500 | - | Detail |
| CX3g029684 | 3:21,459,463-21,462,273 | + | C1H3g26758 | C2H3g09028 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| CX3g028487 | 3:21,463,866-21,464,135 | - | C1H11g16302 | C2H11g04601 | - | - | - | Detail |
| CX3g027402 | 3:21,467,278-21,475,547 | + | C1H3g07265 | C2H3g27980 | LOC_Os03g40690 | Os03g0569800 | - | Detail |
| CX3g028102 | 3:21,477,638-21,478,888 | + | - | - | LOC_Os03g40700 | Os03g0603800 | - | Detail |
| CX3g030467 | 3:21,508,206-21,509,684 | + | - | - | - | Os03g0757950 | - | Detail |
| CX3g030318 | 3:21,520,344-21,520,832 | + | - | - | LOC_Os03g40725 | Os03g0604500 | - | Detail |
| CX3g025313 | 3:21,531,971-21,532,696 | + | C1H3g27392 | C2H3g23447 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| CX3g029068 | 3:21,534,785-21,539,438 | - | C1H3g29572 | C2H3g01476 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| CX3g029593 | 3:21,562,757-21,565,048 | + | C1H3g00814 | C2H3g07310 | LOC_Os03g40830 | Os03g0605300 | - | Detail |
| CX3g028034 | 3:21,566,308-21,566,475 | - | - | - | - | - | - | Detail |
| CX3g030298 | 3:21,575,141-21,579,220 | - | C1H3g11700 | C2H3g22818 | LOC_Os03g40840 | Os03g0165900 | - | Detail |
| CX3g028391 | 3:21,581,331-21,582,149 | + | C1H3g31311 | C2H3g24067 | - | - | - | Detail |
| CX3g030284 | 3:21,584,907-21,587,745 | + | - | - | LOC_Os03g40900 | Os03g0606200 | RMtATP6 | Detail |
| CX3g025804 | 3:21,591,918-21,593,920 | - | C1H3g15527 | C2H3g29089 | LOC_Os03g40930 | Os03g0606100 | - | Detail |