| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g03037 | 4:28,508,342-28,511,342 | + | C2H4g20907 | CX4g034568 | LOC_Os04g54940 | Os04g0642100 | - | Detail |
| C1H4g13287 | 4:28,515,117-28,517,217 | - | C2H4g19294 | CX4g034114 | LOC_Os04g54960 | Os04g0642300 | - | Detail |
| C1H4g31812 | 4:28,523,818-28,524,567 | + | C2H4g06799 | CX4g036426 | LOC_Os04g55000 | Os04g0643000 | - | Detail |
| C1H4g05482 | 4:28,532,000-28,536,833 | + | C2H4g14202 | CX4g036426 | LOC_Os04g55030 | Os04g0643000 | - | Detail |
| C1H4g16082 | 4:28,539,061-28,541,722 | + | C2H4g12695 | CX4g032227 | LOC_Os04g55040 | Os04g0643100 | - | Detail |
| C1H4g07679 | 4:28,542,715-28,546,640 | - | C2H4g28284 | CX4g032328 | LOC_Os04g55050 | Os04g0643200 | - | Detail |
| C1H4g26887 | 4:28,548,673-28,554,004 | + | C2H4g13893 | CX4g032467 | LOC_Os04g55060 | Os04g0643300 | - | Detail |
| C1H4g14904 | 4:28,554,998-28,557,208 | - | C2H4g14055 | CX4g034614 | LOC_Os04g55070 | Os04g0643500 | - | Detail |
| C1H4g04970 | 4:28,558,371-28,565,856 | + | C2H4g07680 | CX4g031952 | LOC_Os04g55080 | Os04g0643600 | OsCNGC6 | Detail |
| C1H4g25880 | 4:28,566,080-28,567,420 | + | C2H4g17557 | CX4g032969 | LOC_Os04g55090 | Os04g0643700 | - | Detail |
| C1H4g19289 | 4:28,573,681-28,575,128 | + | C2H4g05237 | CX4g036082 | LOC_Os04g55100 | Os04g0643800 | - | Detail |
| C1H4g24662 | 4:28,578,497-28,580,095 | + | C2H4g28955 | CX4g032719 | LOC_Os04g55110 | Os04g0644000 | - | Detail |
| C1H4g06814 | 4:28,580,193-28,580,837 | + | C2H4g28955 | CX4g032719 | LOC_Os04g55110 | Os04g0644000 | - | Detail |
| C1H4g18784 | 4:28,592,416-28,596,486 | + | C2H4g15496 | CX4g035567 | LOC_Os04g55150 | Os04g0644300 | - | Detail |
| C1H4g27799 | 4:28,596,906-28,597,796 | - | C2H4g07022 | CX4g033466 | LOC_Os04g55159 | Os04g0644400 | OsAAI1 | Detail |
| C1H4g08012 | 4:28,605,471-28,616,463 | - | C2H4g28358 | CX4g036449 | LOC_Os04g55190 | Os04g0644675 | - | Detail |
| C1H4g06360 | 4:28,620,461-28,622,851 | + | C2H4g15694 | CX4g033425 | LOC_Os04g55200 | Os04g0644700 | - | Detail |
| C1H4g02968 | 4:28,623,524-28,628,307 | + | C2H4g05660 | CX4g032169 | LOC_Os04g55210 | Os04g0644800 | - | Detail |
| C1H4g08695 | 4:28,633,887-28,638,922 | + | C2H4g12779 | CX4g032248 | LOC_Os04g55220 | Os04g0644900 | - | Detail |
| C1H4g06283 | 4:28,641,591-28,654,757 | + | C2H4g19510 | CX4g033214 | LOC_Os04g55230 | Os04g0645100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026097 | 3:21,380,277-21,384,963 | + | C1H3g17649 | C2H3g17661 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| CX3g026160 | 3:21,389,005-21,394,234 | - | C1H3g14588 | C2H3g06081 | LOC_Os03g40600 | Os03g0603100 | - | Detail |
| CX3g029655 | 3:21,408,767-21,409,003 | - | - | - | - | Os07g0464001 | - | Detail |
| CX3g026123 | 3:21,424,861-21,426,033 | - | - | - | LOC_Os03g40650 | Os03g0603300 | - | Detail |
| CX3g027440 | 3:21,437,681-21,438,094 | - | - | - | - | - | - | Detail |
| CX3g026611 | 3:21,455,200-21,456,726 | + | - | - | - | Os03g0603500 | - | Detail |
| CX3g029684 | 3:21,459,463-21,462,273 | + | C1H3g26758 | C2H3g09028 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| CX3g028487 | 3:21,463,866-21,464,135 | - | C1H11g16302 | C2H11g04601 | - | - | - | Detail |
| CX3g027402 | 3:21,467,278-21,475,547 | + | C1H3g07265 | C2H3g27980 | LOC_Os03g40690 | Os03g0569800 | - | Detail |
| CX3g028102 | 3:21,477,638-21,478,888 | + | - | - | LOC_Os03g40700 | Os03g0603800 | - | Detail |
| CX3g030467 | 3:21,508,206-21,509,684 | + | - | - | - | Os03g0757950 | - | Detail |
| CX3g030318 | 3:21,520,344-21,520,832 | + | - | - | LOC_Os03g40725 | Os03g0604500 | - | Detail |
| CX3g025313 | 3:21,531,971-21,532,696 | + | C1H3g27392 | C2H3g23447 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| CX3g029068 | 3:21,534,785-21,539,438 | - | C1H3g29572 | C2H3g01476 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| CX3g029593 | 3:21,562,757-21,565,048 | + | C1H3g00814 | C2H3g07310 | LOC_Os03g40830 | Os03g0605300 | - | Detail |
| CX3g028034 | 3:21,566,308-21,566,475 | - | - | - | - | - | - | Detail |
| CX3g030298 | 3:21,575,141-21,579,220 | - | C1H3g11700 | C2H3g22818 | LOC_Os03g40840 | Os03g0165900 | - | Detail |
| CX3g028391 | 3:21,581,331-21,582,149 | + | C1H3g31311 | C2H3g24067 | - | - | - | Detail |
| CX3g030284 | 3:21,584,907-21,587,745 | + | - | - | LOC_Os03g40900 | Os03g0606200 | RMtATP6 | Detail |
| CX3g025804 | 3:21,591,918-21,593,920 | - | C1H3g15527 | C2H3g29089 | LOC_Os03g40930 | Os03g0606100 | - | Detail |