| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H12g20966 | 12:3,302,542-3,312,076 | + | C2H12g28594 | CX12g015598 | LOC_Os12g07300 | Os12g0170700 | - | Detail |
| C1H12g31083 | 12:3,315,836-3,318,161 | + | C2H12g30320 | CX12g018577 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| C1H12g14333 | 12:3,324,765-3,325,004 | + | C2H12g06137 | CX12g017511 | LOC_Os12g07340 | Os12g0170800 | - | Detail |
| C1H12g02404 | 12:3,328,220-3,328,624 | + | C2H12g23442 | CX12g017511 | LOC_Os12g07310 | Os12g0170800 | - | Detail |
| C1H12g08123 | 12:3,330,842-3,338,060 | + | C2H12g00108 | CX12g017364 | LOC_Os12g07350 | Os12g0171200 | - | Detail |
| C1H12g09894 | 12:3,358,893-3,359,354 | - | C2H8g28836 | CX12g017951 | - | - | - | Detail |
| C1H12g26803 | 12:3,388,120-3,388,792 | + | C2H12g24240 | CX12g016050 | LOC_Os12g07380 | Os12g0171600 | - | Detail |
| C1H12g22841 | 12:3,393,995-3,400,309 | - | C2H12g23734 | CX12g015255 | LOC_Os12g07450 | Os12g0172500 | - | Detail |
| C1H12g20718 | 12:3,445,465-3,446,739 | + | C2H12g19372 | CX12g016915 | LOC_Os12g07480 | Os12g0173300 | - | Detail |
| C1H12g19965 | 12:3,456,225-3,457,255 | + | C2H12g24516 | CX12g016817 | LOC_Os12g07490 | Os12g0173366 | - | Detail |
| C1H12g02920 | 12:3,459,345-3,461,996 | - | C2H12g30484 | CX12g016050 | LOC_Os12g07500 | Os12g0173400 | - | Detail |
| C1H12g26529 | 12:3,462,717-3,468,073 | + | C2H12g29759 | CX12g015915 | LOC_Os12g07530 | - | - | Detail |
| C1H12g02496 | 12:3,471,099-3,476,184 | + | C2H12g09225 | CX12g015330 | LOC_Os12g07540 | Os12g0174100 | - | Detail |
| C1H12g19045 | 12:3,492,580-3,493,308 | + | C2H12g07410 | CX12g017802 | - | Os12g0174300 | - | Detail |
| C1H12g09187 | 12:3,503,366-3,504,504 | + | C2H12g28346 | CX12g017402 | LOC_Os12g07580 | Os12g0174700 | - | Detail |
| C1H12g24191 | 12:3,506,423-3,511,311 | - | C2H12g00464 | CX12g015542 | LOC_Os12g07590 | Os12g0174800 | - | Detail |
| C1H12g21338 | 12:3,541,766-3,542,736 | + | C2H12g23569 | CX12g017649 | LOC_Os12g07640 | Os12g0175400 | Os2R_MYB94 | Detail |
| C1H12g22991 | 12:3,550,454-3,554,122 | - | C2H12g11252 | CX12g017726 | LOC_Os12g07650 | Os12g0175500 | - | Detail |
| C1H12g00864 | 12:3,554,864-3,555,190 | + | C2H12g28545 | CX12g015326 | LOC_Os08g06840 | - | - | Detail |
| C1H12g14489 | 12:3,556,678-3,556,994 | + | C2H12g13795 | - | - | Os12g0175600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g026097 | 3:21,380,277-21,384,963 | + | C1H3g17649 | C2H3g17661 | LOC_Os03g40550 | Os03g0602600 | HSA1, OsFLN2, HSA1/OsFLN2 | Detail |
| CX3g026160 | 3:21,389,005-21,394,234 | - | C1H3g14588 | C2H3g06081 | LOC_Os03g40600 | Os03g0603100 | - | Detail |
| CX3g029655 | 3:21,408,767-21,409,003 | - | - | - | - | Os07g0464001 | - | Detail |
| CX3g026123 | 3:21,424,861-21,426,033 | - | - | - | LOC_Os03g40650 | Os03g0603300 | - | Detail |
| CX3g027440 | 3:21,437,681-21,438,094 | - | - | - | - | - | - | Detail |
| CX3g026611 | 3:21,455,200-21,456,726 | + | - | - | - | Os03g0603500 | - | Detail |
| CX3g029684 | 3:21,459,463-21,462,273 | + | C1H3g26758 | C2H3g09028 | LOC_Os03g40670 | Os03g0603600 | - | Detail |
| CX3g028487 | 3:21,463,866-21,464,135 | - | C1H11g16302 | C2H11g04601 | - | - | - | Detail |
| CX3g027402 | 3:21,467,278-21,475,547 | + | C1H3g07265 | C2H3g27980 | LOC_Os03g40690 | Os03g0569800 | - | Detail |
| CX3g028102 | 3:21,477,638-21,478,888 | + | - | - | LOC_Os03g40700 | Os03g0603800 | - | Detail |
| CX3g030467 | 3:21,508,206-21,509,684 | + | - | - | - | Os03g0757950 | - | Detail |
| CX3g030318 | 3:21,520,344-21,520,832 | + | - | - | LOC_Os03g40725 | Os03g0604500 | - | Detail |
| CX3g025313 | 3:21,531,971-21,532,696 | + | C1H3g27392 | C2H3g23447 | LOC_Os03g40770 | Os03g0604566 | - | Detail |
| CX3g029068 | 3:21,534,785-21,539,438 | - | C1H3g29572 | C2H3g01476 | LOC_Os03g40780 | Os03g0604600 | - | Detail |
| CX3g029593 | 3:21,562,757-21,565,048 | + | C1H3g00814 | C2H3g07310 | LOC_Os03g40830 | Os03g0605300 | - | Detail |
| CX3g028034 | 3:21,566,308-21,566,475 | - | - | - | - | - | - | Detail |
| CX3g030298 | 3:21,575,141-21,579,220 | - | C1H3g11700 | C2H3g22818 | LOC_Os03g40840 | Os03g0165900 | - | Detail |
| CX3g028391 | 3:21,581,331-21,582,149 | + | C1H3g31311 | C2H3g24067 | - | - | - | Detail |
| CX3g030284 | 3:21,584,907-21,587,745 | + | - | - | LOC_Os03g40900 | Os03g0606200 | RMtATP6 | Detail |
| CX3g025804 | 3:21,591,918-21,593,920 | - | C1H3g15527 | C2H3g29089 | LOC_Os03g40930 | Os03g0606100 | - | Detail |